Scaffold Ga0315909_10013701

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10013701
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8426
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F028150	Metagenome / Metatranscriptome	192	Y
F037227	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1001370110	F000473	N/A	MDSSHFKHGINLWTGEPNKPVFYNSEMAKAVRSITKPSNKLMMDIVKYPEFLALRLYEDNFIQFEGLKKEMVIDYVGKVKKLIESYGVRCELEGVPSEKVL
Ga0315909_1001370112	F000671	GAGG	MEKLLCYSCNKSKNKLNMKRSTLFPINLLMCETCITSKYEPRWVIILSGRQNGSESVREFILKKRYEGAEISASELLV
Ga0315909_1001370113	F002060	AGG	MTLDLNSIIIAISAAILSGMGTAIIAGLNENKREKNRQREREQDHLKIELKDLKIELYKLEKELTDWKDKYYSAIQELISVKSELESALSELSHIEFKHDFDTEF
Ga0315909_1001370118	F037227	N/A	MANMTVLEGIIEDVAVELYQKLWNAIPADEQTEEASKAIGLNARETTLYVIQNFMNKFNAAAEALKDS
Ga0315909_100137012	F028150	AGGGGG	MNWLKKRVIAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFMTIGIREKAEKE