NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10012494

Scaffold Ga0315909_10012494


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10012494 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8890
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014089Metagenome / Metatranscriptome266Y
F033645Metagenome / Metatranscriptome177Y
F037494Metagenome168N
F105053Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1001249410F105053GGAGMNELSIVIAMLIAGILWAAMSYSVGYKEGQREGFKRGRAVSRHAAKDVR
Ga0315909_1001249411F033645AGGAMSFLDNYEDVSARIARLWLTHPTARVQTNIVDFNAEKGYVLIQAQIFREYEDLHPSATDYAFGNVATYNVNMKKFFVEDTVTSAIGRAIGLLLGADKRPTRQDMEKVETISAKVANSTADDYDPWTQKFGEVPSYKTAEEAEQSGIPSLGSSMDEIAKQLGGELVAEAPQCSHGHRIFKTGEAKTGKAWGGWFCVEKTKATQCSPLWYVLASDGKWKPQV
Ga0315909_1001249412F014089AGGMSDLIEIIYPQSMTAKLLQNGEVIAEYKIEQCDSCSKLKKLDAFGYTKGQGGEKLTWLCGDCR
Ga0315909_1001249413F037494N/AMKVKPTIEDKVLAHTVALERIAQVNGQPDASSRYDRQLGFHDYVAQVAESIVAEILVARYLGYTDFDPRSSQFKKTADVGSFIEVKWTRYETGQCIIGEGDRATDVAVLVVGTSPNYRLAGWIPVAMAKRPKYKNSKQPTWWVDQKNLQPIENLKGSNYGQAAL
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Institute for Fundamental Biomedical Research
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