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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031857 Open in IMG/M |
| Scaffold ID | Ga0315909_10009097 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10787 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (89.29%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000821 | Metagenome / Metatranscriptome | 876 | Y |
| F003212 | Metagenome / Metatranscriptome | 500 | Y |
| F003863 | Metagenome | 464 | Y |
| F017972 | Metagenome | 237 | Y |
| F018135 | Metagenome | 236 | Y |
| F020863 | Metagenome | 221 | Y |
| F086805 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315909_1000909710 | F017972 | GGAGG | VRTSHLQLVTHEHSATIKSKSDVLSPYGPVNPASTTWLAQETLRANQEARLLELLNSLESVVDNLNFKSFTVYDTLIIAMEGVRAALSATPIDEAGTK |
| Ga0315909_1000909711 | F003863 | GGAGG | MESRQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIIDSNSKLTVGIHTRANAVPEVAGRTDYESTDEGYNGGEA |
| Ga0315909_1000909715 | F000821 | GGAG | MNREYLEAKVDLCLNQAEIDLQQEEIARAIANLRRANSALTQLFGFEEEVESDN |
| Ga0315909_1000909717 | F003212 | AGGAGG | MKDRYLVTLEIETYDGDPREWDWEKLSTGEDVIKIIETQWKGRALPTNEGEGNE |
| Ga0315909_1000909723 | F018135 | AGG | MTIERVQHSGAYVISDFVGEGAGEYLFTRTYYGYTLKQAKAQFKIELKEAK |
| Ga0315909_1000909724 | F086805 | AGGAGG | VRELSKRGNLVAGIAIGLLIAGLVWVSGNVWITEEGRICLGSMLKCM |
| Ga0315909_1000909725 | F020863 | AGGAG | MNTTMQDLHRLVAVLEELVKPLLEGEEVEDTYESNKRPHLTLQAGSKTYGRAFRVHFTGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRTLIAGIRTGQMITQEASK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |