Scaffold Ga0315909_10008586

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10008586
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11175
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.17%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F004839	Metagenome / Metatranscriptome	421	N
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F033801	Metagenome	176	Y
F041648	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000858613	F033801	N/A	MKYEIKWKSGRIITDAATVEEAIKKFKELGIKVPEKEISIASFQ
Ga0315909_1000858619	F014956	N/A	MNIQEFALNASLTVCPNHIVEPLHLKRWWRQRGVGELEKYFCTGKKIKYDDEINWKTISDHKKQMWYDSLNFQIQTGNEYSKRTS
Ga0315909_1000858620	F041648	N/A	MENIVSTFTNNSLTRYYEERIKYLEGENERLRNEARADFLTVLEFWIYAQRTIETYVMFHKEANHDHYIEMIKTILQSLEYHEEKMLDTGINKLRLEIIARCKEAIIKCQQITAAR
Ga0315909_1000858621	F021732	N/A	MITKYTVKCCLDKKRNHFVHVIFSSGFGLYGANKPHHEDDNIEIHGWTFEPEDIDPECRLYPPITRFNLMPLVAENEMDWVIINN
Ga0315909_100085863	F001640	N/A	MKNILFFLLLPYLALSQDVVSDTVYIQKQGAIYYIVTMTTFSDSTVTGNKQILGDSLTAINALVTDAERQSNTIAIHAKPLILKGKAVKRINYYNNLHLQISGKPVYTSTALRDSTAFIGDWTLVFNGENILGEIQINNANRFIFNPDNGKVYTISTNLLLSTFTNQVSFAFNGVRYDLYKFANGKFASVDGDVRLIKKE
Ga0315909_100085869	F004839	N/A	MCKYFLVLIFIYKFTNQKEQNVFFTTLKTNKMEKNFTNIQFKWTFESIADNIPTIMLLTIILTYGVNAYLTAIFLPINFWVALAATSILQLGRFAVVFMDFLNPTKGRSPYPPKIALGATVIALIELFFGLQDKYSGSEFITMFFFVGTIVCFGYLLEINFVNKGVEAYGLTEPKVIKRRKRKPTVKIIKEEVPKDFKPYVTSFQTITL