NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10004510

Scaffold Ga0315909_10004510


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10004510 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16372
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (56.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015724Metagenome252Y
F023840Metagenome208Y
F047028Metagenome150N
F085646Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000451013F023840N/AVRDEREQLHVGLTLEDDFTLTRLKNAAHALKGEDRDQYLWKTIFRFVCRERAFKSVMEEIGVVIDTNIDIFDEEEDE
Ga0315909_1000451018F015724GGCGGVAKHKGSDDFGWHTHQPKKSNFGFKAVEGASSRHQLSTPMPFKRKFRPDFNLKDFSILYDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGVGAALPGVCYMYPSMSQDMAMRMVAVRPRDSFNFLDFGYSIQSVTQTSGTTYAVQLSSNFGPPISFFTGEILSDRFDSTGAEKTTYNNYVVIGVGNGTTPLTPSFAPVFNSIFISLDTNNSWSVIDNETLAAPASLPTPGDYFTTEMRFGCNCPDYLAREDFNLYEYNLKRRYPYTLPQDAKPGQYDAGKDFLSSRESNSRDLPGFTRDFGFLYVKQLLNLPSYTDSSKVYSDPNLIYFAPRWCKHIYATFWDMQNRFGSDMFPLAWLAQPTDEPMDDRYRDEFEMNLAKQTTFDKRQQHLRWWEKYSPSQNTVPVHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFKIDEYDPFAPPDPGVTPRLDGGIYNNGVLVSGATLIYDGGQYSNGALIPYPSYPSLINGGTY
Ga0315909_100045107F085646N/AMDQTLKEIKTIREALTSIDISLQLLVSQKEGKTTSAFVSKKTISQRLNIPSVAIDKLIHQGIVSGGTSGLVEGKHYCKVDPTERNSSKFLYDPHAVMEAAWKNFTNV
Ga0315909_100045108F047028GGAMSDLSRGATALIKNLFGGNETERMISAGVVRTILSDITRLYFENRAARGEGILIFNPEDPENSKYLTKEELENDLAVAQEGMDEKAEALFAKVIQVIEKESESDLALVAMVQSNEIAIHLIDPIEANKKIDELSNSLIL

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