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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031857 Open in IMG/M |
| Scaffold ID | Ga0315909_10004510 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16372 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (56.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015724 | Metagenome | 252 | Y |
| F023840 | Metagenome | 208 | Y |
| F047028 | Metagenome | 150 | N |
| F085646 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315909_1000451013 | F023840 | N/A | VRDEREQLHVGLTLEDDFTLTRLKNAAHALKGEDRDQYLWKTIFRFVCRERAFKSVMEEIGVVIDTNIDIFDEEEDE |
| Ga0315909_1000451018 | F015724 | GGCGG | VAKHKGSDDFGWHTHQPKKSNFGFKAVEGASSRHQLSTPMPFKRKFRPDFNLKDFSILYDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGVGAALPGVCYMYPSMSQDMAMRMVAVRPRDSFNFLDFGYSIQSVTQTSGTTYAVQLSSNFGPPISFFTGEILSDRFDSTGAEKTTYNNYVVIGVGNGTTPLTPSFAPVFNSIFISLDTNNSWSVIDNETLAAPASLPTPGDYFTTEMRFGCNCPDYLAREDFNLYEYNLKRRYPYTLPQDAKPGQYDAGKDFLSSRESNSRDLPGFTRDFGFLYVKQLLNLPSYTDSSKVYSDPNLIYFAPRWCKHIYATFWDMQNRFGSDMFPLAWLAQPTDEPMDDRYRDEFEMNLAKQTTFDKRQQHLRWWEKYSPSQNTVPVHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFKIDEYDPFAPPDPGVTPRLDGGIYNNGVLVSGATLIYDGGQYSNGALIPYPSYPSLINGGTY |
| Ga0315909_100045107 | F085646 | N/A | MDQTLKEIKTIREALTSIDISLQLLVSQKEGKTTSAFVSKKTISQRLNIPSVAIDKLIHQGIVSGGTSGLVEGKHYCKVDPTERNSSKFLYDPHAVMEAAWKNFTNV |
| Ga0315909_100045108 | F047028 | GGA | MSDLSRGATALIKNLFGGNETERMISAGVVRTILSDITRLYFENRAARGEGILIFNPEDPENSKYLTKEELENDLAVAQEGMDEKAEALFAKVIQVIEKESESDLALVAMVQSNEIAIHLIDPIEANKKIDELSNSLIL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |