Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10004510 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16372 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (56.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015724 | Metagenome | 252 | Y |
F023840 | Metagenome | 208 | Y |
F047028 | Metagenome | 150 | N |
F085646 | Metagenome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315909_1000451013 | F023840 | N/A | VRDEREQLHVGLTLEDDFTLTRLKNAAHALKGEDRDQYLWKTIFRFVCRERAFKSVMEEIGVVIDTNIDIFDEEEDE |
Ga0315909_1000451018 | F015724 | GGCGG | VAKHKGSDDFGWHTHQPKKSNFGFKAVEGASSRHQLSTPMPFKRKFRPDFNLKDFSILYDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGVGAALPGVCYMYPSMSQDMAMRMVAVRPRDSFNFLDFGYSIQSVTQTSGTTYAVQLSSNFGPPISFFTGEILSDRFDSTGAEKTTYNNYVVIGVGNGTTPLTPSFAPVFNSIFISLDTNNSWSVIDNETLAAPASLPTPGDYFTTEMRFGCNCPDYLAREDFNLYEYNLKRRYPYTLPQDAKPGQYDAGKDFLSSRESNSRDLPGFTRDFGFLYVKQLLNLPSYTDSSKVYSDPNLIYFAPRWCKHIYATFWDMQNRFGSDMFPLAWLAQPTDEPMDDRYRDEFEMNLAKQTTFDKRQQHLRWWEKYSPSQNTVPVHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFKIDEYDPFAPPDPGVTPRLDGGIYNNGVLVSGATLIYDGGQYSNGALIPYPSYPSLINGGTY |
Ga0315909_100045107 | F085646 | N/A | MDQTLKEIKTIREALTSIDISLQLLVSQKEGKTTSAFVSKKTISQRLNIPSVAIDKLIHQGIVSGGTSGLVEGKHYCKVDPTERNSSKFLYDPHAVMEAAWKNFTNV |
Ga0315909_100045108 | F047028 | GGA | MSDLSRGATALIKNLFGGNETERMISAGVVRTILSDITRLYFENRAARGEGILIFNPEDPENSKYLTKEELENDLAVAQEGMDEKAEALFAKVIQVIEKESESDLALVAMVQSNEIAIHLIDPIEANKKIDELSNSLIL |
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