Scaffold Ga0315909_10003656

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10003656
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18612
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.95%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F025487	Metagenome	201	Y
F025982	Metagenome / Metatranscriptome	199	Y
F040073	Metagenome	162	Y
F043890	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000365623	F040073	N/A	MLQFEMSPEDMFWQEKTIRSINECNSISELKEMATLLVKIATMRQVAIKGLVSDAMDLMKENYSHEVHKQSQ
Ga0315909_1000365625	F002333	N/A	MSTQLNTELNAAQKLIYTRTNISRAYQGFDDSEISGIYLRDDNCIVVRTDGSEQVYAREVIKVAFTDYTQRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDTNKVLHLLQSDQTDLGHLVAPDGLRLPNRPLDFDRDMEADESTPVVAEPWCSCGSYQRQLSNVSDFASEITGFKPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWWYAPPVDHISDGRFVLLYTNSGAQAPLSHWRTYKPKEIFTQHDAWDLFFNMMDAGYVPFPGTALPQLKSAIKKQ
Ga0315909_1000365627	F043890	N/A	MQKMSSLDMLKLNSIEKLTIECIEEEDGSMTIHINWDNTDPDLQWWTDLGEEDQKSFILDALTNALSCYVN
Ga0315909_1000365628	F002738	N/A	MLLVAMSIETYGLSSEQYEEFFETNIKLAGQLYLKACKILKDQGAGALDFKTTLDLYQECIYATNDDCRRYQKANNPEAIKNDDIFGLSPSREELMAEVQSVNTKVEALVDYLSKLVETTTNGLNGIAKTLVD
Ga0315909_1000365629	F013517	N/A	MFESLFAAVLPVMKDLLWAAAGILLTYAFNKIQSYCL
Ga0315909_1000365631	F001018	N/A	MTQITQAKLGELSVIKLYEHYGALERSLPLLTPESQELAKAELEACANLRSEKVDRIYYAIAAHEDALERIKKEGELITQAKKHHEAQLKSLKGLLNYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISSDPEFWHTEERANYCIEEEITTTKRVVLRSMSGEILDERIEPKTTTKVLPNLDAIRNAYQNGKQLPPGVKVQQEYSVRSKRIFGEPRVELAASEYPGQLLPEDSSTD
Ga0315909_1000365632	F025982	N/A	MSCHDHALKDFELQLEMNCLQADMLKENGVVIPYHMDEYEDLEQKKLKLLLGKRFHQNASHAYWYYLQKEKGGK
Ga0315909_1000365634	F008128	N/A	MKTIPVPKLTVSFAVDLEVEYNSFGGKTAEEIAEALQDELHDLLFELPQVTGVYSTYTSIASDKE
Ga0315909_100036567	F025487	GGGGG	MTSELIDLDLVDKTIALIPEQAWPQVQQVIVTTLVDNMPGSVLETLTGSYDNFDRAEEILYDYYQLPKKQEDLIVDAFKIMGPVNCLELLHSLNLSNSQQ