Scaffold Ga0315909_10002770

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10002770
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22110
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005740	Metagenome / Metatranscriptome	391	N
F032582	Metagenome	179	N
F041041	Metagenome / Metatranscriptome	160	N
F097206	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000277012	F005740	GAG	MKLIVQDIRSTIARVIGVCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLNSGDACVGKQLIDRGTVVSYRDMSGGLNSVLRVYPGDNSDIGKTIILQGTDANGNWIRTQLPSGSWIDGEQLTLAMPYVQSIKLFTSLTGVIREATNTASRLYEKNLTSGAELDLAVYDPDETLPQYRRSLLTDRCHNDEDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF
Ga0315909_1000277017	F004664	GGA	MGKAGEGRRLHLLRRGRMSGYKILNEHNVIPGGWNYRVPETGIEIPAGSLPQLREFVRNHYAANAVKVPTNLDILITEYQCRNGADCSYDEVEIPRPKGLKSLQIGDVIRFSMSLIHGLTVGGGKVDQAEAVRRASICAGCQFNRKPLGCTGCNARVLKEAVRTLSQHGTTPLDDQLQSCEFCGCFIRSMVWFPIETLHKFTDATENANLPAHCWKKRPCTET
Ga0315909_100027702	F097206	AGGAGG	MIRRSSRPPSPDELKQLLIAAFCAGMVITAAYFILFVVK
Ga0315909_1000277022	F032582	N/A	MKLQLEKTPCFIISKPESEKERRCIRYMKSFGIDAVPMYGFRAENCGISTDYYHTREKEKAKVKTIVAGLSHFSVWSAIKWMVESKITDHRTFLIVEDDVEFTCSDWKAKLADNLDYLPSDWHVVYIGSCCADPIEDHSYIASNLYKLVRGMCTHAYLVNYEGVCKLLETNQKVWGPIDIQMLVDSMPRMNFYGILPRLATQENTKLYP
Ga0315909_1000277023	F041041	N/A	MKDIIRSLSLKALKRFANGGDGQADLLMQIEDLQKTLEIRTKEHDEHLTEVREERDHWLALYDEIKFAAEFLMSYAKNDVPKLAEQCDWEVGKITLPEEVGTYYFNPAIVQEPSGQILLFARRCRNKREKDEDVYLEKNDIVVFELTKDLGAIKKALINLTSHMPGEQFEDPRVVKFGDKYGLSCCTFVPFKSYAHQAMFVLDKQFLNVARFDPIYGNNYAQAMVNDGHEKNWLYFVHDNTP