Scaffold Ga0315909_10002698

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10002698
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22391
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F006218	Metagenome / Metatranscriptome	378	Y
F081080	Metagenome	114	N
F090367	Metagenome / Metatranscriptome	108	N
F105047	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000269812	F081080	N/A	MVNGNCLDTMSTGKKFDTFRECTIAGYGFIAEQNKLFPLDQFEKVKPSFHFDCIETKEQS
Ga0315909_1000269822	F006218	N/A	MGKKKLIIKSCGNCHICGKEHMSNEGGWVINAEKLNFCHSIDHSCYEIYFNNVRTKEKQALVNNNENDKRMNMYIEYLKKQKCKHKYATE
Ga0315909_1000269829	F004111	AGGA	MKEKIKQVNDLCASNGTYINQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYIIMKCIITKCDPEHIIATGYSKQFRDKPGYLEIAETFAITRALSIMGILLEDMTSKEEYEELDIPVQPMNGKGTTSTNVDDGVINELMKKVHYAPHTAKLDFLWRANKDLLNQIKIKDQSTYDSILNKFNSKRDEITTQNEV
Ga0315909_1000269833	F090367	N/A	MKHKLAQWQEEKKLKNKDAAKFLGLKGTNPTVTLLRWKNCQRIPHPRFMKQITKLTGITPIDFYEAWYETHKL
Ga0315909_1000269834	F105047	GAGG	MKHINYDKVIVEWLDIQSCDNAWSSLDEFDKLLPAKCTTIGYLYEDNKDWIKTFATYSINENLEDFDIGDAVVIPRGCILSIKKIEN