Scaffold Ga0315909_10002381

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10002381
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24083
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (32.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F043890	Metagenome / Metatranscriptome	155	Y
F056552	Metagenome	137	Y
F067649	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000238110	F043890	N/A	MQKTSSLGMSNPDSIDKLQIEFIDEEDGCGTIRIDWDETDPDLQWWTDLGPEGQETFMIDALTNALDSYS
Ga0315909_1000238112	F002738	N/A	MAFDTYGLSTEQYVKFFKDNVRLSARLYLDTCNILSAEGAGNLDFKTVLDMYQEAVYAANDDCRKYQKTNNPEAIKDNDIFGLTPSREELMEEIKSVNAKVEALTDYIAELVKVTANGLNGLAETFDEALT
Ga0315909_1000238113	F013517	N/A	MFETFLGALIPVVKDLLWAAAGMLLTYTINKIQSHFQHI
Ga0315909_1000238114	F001018	N/A	MSQITKTKLEDLNVIKLYEHYGALERSLPLLTPESQELAKAELEACADLRSEKIDRIYYAMAAHEDALERIKKESDLITQAKRHHESQLQSLKNLLSWLRRVLPLDTSRIQGKNYEFVLSKKKELTVEITSDPEFWHSDERKLYCIEQETTTTKRVVVRSMSGTVISERTEPKTKLEVLPNLDAIRNAYQEGRPIPHGVKVEQQYAVRKNRIFTTKRMAAQAPEYIGELLSESDGAE
Ga0315909_1000238117	F008128	N/A	MEPVPVPKLTVSFAVDVEVEYNSFGGKTAEEISESLQDELHDLLFELDQVTGVYTSCTSIAFED
Ga0315909_1000238137	F067649	N/A	MEIYISVGEWMNTLQDRMTTAVDGDCFCLPTDMHLHAFWLIKNSMFPERNFKVEVHQER
Ga0315909_100023814	F056552	GAGG	MTTPTHDQFTLLYEDEDTKVLHEFKGVVADDVIQHLIDFLKGCGYMEGSIFETMKELSEMYFDSLSTQQYVMKWDKPEAE
Ga0315909_100023818	F002333	N/A	MSVQHQTDLNSAQALIYSRSNIRRAYPEFDDASIAGIYLRGDHCLVVRHDGTEQIYDRSLIKTAFQSYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYTHALGHLTSNAKLQAHWADKFIHVSNPEKIKALLQSDQTDLGHLVAPDGLRLPNRPLDMDGELDDVQEQQSSFGEPSCSCGSFQRQLSNLSAFQEEIQGFKPWCIHLTWFNKYRELLCKRTDVRNASPSGTPDKCVAWWYAPPADHISDGRFVLLHTKSGAQAPLSHWRTYKPKEVFTQHHAWDLFFNMMEAGYTPFPGVSLPQLKAAVKKQ