Scaffold Ga0315909_10001646

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10001646
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30028
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (22.45%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F014228	Metagenome	264	N
F015858	Metagenome / Metatranscriptome	251	Y
F024249	Metagenome	206	N
F025437	Metagenome	201	N
F039112	Metagenome	164	Y
F043238	Metagenome / Metatranscriptome	156	Y
F093771	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000164612	F025437	N/A	MRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAINKDHSSVAYAVRMHQSRLIYGDYQHYFKVACGVLEDNPMAWVDKPDYDSMQQELNKLNEVVMELSKYKELYITLKKTFDEF
Ga0315909_1000164613	F010908	N/A	LKQILSPFQKYECFAVDGVDYLVIDYTIIQDRDDKLVEWASEMKFKRLKDHKHYTMPISKIITNHKEGRAKLCKCK
Ga0315909_1000164614	F009202	N/A	MKHLRAMYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKANGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDQL
Ga0315909_1000164617	F039112	N/A	MTLSFSADVYTEMVQVQQAQIQALQNKVAELQARIEVLEQQAILFI
Ga0315909_1000164618	F009600	N/A	MRILDPGQLSYKIVVGKVPSLNAFYASKHWTARVKAKELASKEVMSQLEKHDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEITFTGLVVTK
Ga0315909_1000164621	F014228	N/A	MNSKLNPNRLAMWIIPMAATLAVLSSCASVKPVLESVVVRDTVIVTQTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKERKQRGWTLEGGLTMLALVLVAAYFVKRWIDKLLE
Ga0315909_1000164624	F093771	N/A	MTKESADSVLTSWSLTGTGLLVSYVHQAFGLAVLVASLGYTLWKWRRDYLKDKGAN
Ga0315909_1000164627	F015858	N/A	VSNFISWGVVYCSTWFGQVDETTLSIQNQSAPPCFAPANEIVEQFETRVLNDGGTFEGYDCLTAALQDLGEDTYYDIFDTYIQRMTDDGATLEGEDCLIDQLFILN
Ga0315909_100016463	F043238	N/A	MKYETISQLLREMTTCGLSESILKDIETIEQVHLRFAYHDAPLGVPFEDWYAATFKTETK
Ga0315909_100016465	F024249	N/A	MIFTYNDLKFWLEQADLLPQSYWDALEDYDPDEKNSDEILAKWLGFVHVADFYEYEMQITYVEESYNEDGYTNTTAYPTTSIYRDVPGLDKDIYAKWMNWATQVASEE