Scaffold Ga0315909_10001068

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10001068
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36979
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (54.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005530	Metagenome / Metatranscriptome	397	Y
F010917	Metagenome	297	Y
F013885	Metagenome / Metatranscriptome	267	Y
F020539	Metagenome / Metatranscriptome	223	Y
F037125	Metagenome	168	Y
F050330	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000106814	F037125	N/A	MIDRKQRGSNDLEVVIHDLKKEIDRLNEEVQAKQIEIKLLEEAINNKPE
Ga0315909_1000106821	F010917	N/A	MNIDKIVFGSRTVKLDFIDKDTADKKKIFGEFHPDKNEITLDKSLDNMQLINTLMHELNHLLFDEYKLELSAKSEELVCNSLANGMCHILYQNQDLLDFLYKSLKKD
Ga0315909_1000106823	F050330	GAG	MANETTSSSLAVLYTNRKSKGTYRVYKTKKMPRKKK
Ga0315909_1000106852	F005530	AGGA	MDIIKIDSDFTPETHTVSNTSAQSNPIFTGSGIIRIAVTSGTHVKFGVNPTATVEDLLIPDNQVQYFSFKSGQVVAFIHHGGGSGEINICAID
Ga0315909_1000106856	F020539	N/A	MARTQSEELISLRGHITGVRREIKILGTTVYKLEKRLEKLFWSIFIALGTLSMALLTLFLAK
Ga0315909_1000106857	F013885	N/A	MEITMLNYSDFKNYWTKFYADAFEDAKTFWKDYAKNIEQFYKK