Scaffold Ga0315320_10088518

Overview

Basic Information

• Taxon OID: 3300031851
• Scaffold ID: Ga0315320_10088518
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2376
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036931	Metagenome	169	N
F089523	Metagenome	109	N
F090886	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_100885181	F036931	GAGG	MVKKVYFKGVKFSGYSNWHRQQHNCLGFSDIDQVSTCNACSKPLFLAETVFNNGQGWNKK
Ga0315320_100885183	F089523	N/A	MRVMPKKVKAKSAKIVKFVKAKTSKNITLDKLPNGELIISLEHYKSRDYERMFTIDDVLLLIPNDLKKRTWANWRELNNAPNVLREDKLGPEYVIRGKKIYRIKLIWILRYIKGLNWEPSTQVQVSATQSDEIQLRSSSSI
Ga0315320_100885184	F090886	N/A	MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTSSS