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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F090886 |
| Family Type | Metagenome |
| Number of Sequences | 108 |
| Average Sequence Length | 43 residues |
| Representative Sequence | MIKQTQIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGIY |
| Number of Associated Samples | 74 |
| Number of Associated Scaffolds | 108 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 54.29 % |
| % of genes near scaffold ends (potentially truncated) | 94.44 % |
| % of genes from short scaffolds (< 2000 bps) | 77.78 % |
| Associated GOLD sequencing projects | 58 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (82.407 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (35.185 % of family members) |
| Environment Ontology (ENVO) | Unclassified (93.519 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (93.519 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 34.88% β-sheet: 0.00% Coil/Unstructured: 65.12% | Feature Viewer |
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| Powered by Feature Viewer | |||||
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| Pfam ID | Name | % Frequency in 108 Family Scaffolds |
|---|---|---|
| PF13443 | HTH_26 | 13.89 |
| PF01381 | HTH_3 | 2.78 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 82.41 % |
| All Organisms | root | All Organisms | 17.59 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300001355|JGI20158J14315_10140214 | Not Available | 755 | Open in IMG/M |
| 3300001450|JGI24006J15134_10034206 | Not Available | 2199 | Open in IMG/M |
| 3300001450|JGI24006J15134_10043563 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii | 1883 | Open in IMG/M |
| 3300001450|JGI24006J15134_10143796 | Not Available | 791 | Open in IMG/M |
| 3300001460|JGI24003J15210_10120405 | Not Available | 717 | Open in IMG/M |
| 3300005933|Ga0075118_10180120 | Not Available | 694 | Open in IMG/M |
| 3300006025|Ga0075474_10107963 | Not Available | 895 | Open in IMG/M |
| 3300006027|Ga0075462_10177831 | Not Available | 645 | Open in IMG/M |
| 3300006027|Ga0075462_10191536 | Not Available | 617 | Open in IMG/M |
| 3300006164|Ga0075441_10049176 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC028P | 1676 | Open in IMG/M |
| 3300006164|Ga0075441_10320871 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC028P | 564 | Open in IMG/M |
| 3300006190|Ga0075446_10161453 | Not Available | 635 | Open in IMG/M |
| 3300006193|Ga0075445_10336716 | Not Available | 506 | Open in IMG/M |
| 3300006802|Ga0070749_10240162 | Not Available | 1029 | Open in IMG/M |
| 3300006810|Ga0070754_10103362 | Not Available | 1405 | Open in IMG/M |
| 3300006810|Ga0070754_10396741 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC028P | 604 | Open in IMG/M |
| 3300006810|Ga0070754_10514825 | Not Available | 514 | Open in IMG/M |
| 3300006874|Ga0075475_10407844 | Not Available | 545 | Open in IMG/M |
| 3300006916|Ga0070750_10038422 | Not Available | 2358 | Open in IMG/M |
| 3300006916|Ga0070750_10058805 | Not Available | 1844 | Open in IMG/M |
| 3300006919|Ga0070746_10046536 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC028P | 2275 | Open in IMG/M |
| 3300006919|Ga0070746_10047882 | Not Available | 2238 | Open in IMG/M |
| 3300006919|Ga0070746_10150804 | Not Available | 1132 | Open in IMG/M |
| 3300006921|Ga0098060_1094443 | Not Available | 850 | Open in IMG/M |
| 3300006921|Ga0098060_1162906 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC028P | 616 | Open in IMG/M |
| 3300006947|Ga0075444_10076279 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii | 1513 | Open in IMG/M |
| 3300006947|Ga0075444_10169819 | Not Available | 901 | Open in IMG/M |
| 3300006947|Ga0075444_10235711 | Not Available | 725 | Open in IMG/M |
| 3300007344|Ga0070745_1112854 | Not Available | 1053 | Open in IMG/M |
| 3300007344|Ga0070745_1184914 | Not Available | 776 | Open in IMG/M |
| 3300007345|Ga0070752_1040238 | Not Available | 2209 | Open in IMG/M |
| 3300007345|Ga0070752_1210795 | Not Available | 770 | Open in IMG/M |
| 3300007345|Ga0070752_1252482 | Not Available | 685 | Open in IMG/M |
| 3300007346|Ga0070753_1026727 | Not Available | 2504 | Open in IMG/M |
| 3300007538|Ga0099851_1066299 | Not Available | 1403 | Open in IMG/M |
| 3300007539|Ga0099849_1033505 | Not Available | 2189 | Open in IMG/M |
| 3300007539|Ga0099849_1193750 | Not Available | 767 | Open in IMG/M |
| 3300007640|Ga0070751_1064524 | Not Available | 1570 | Open in IMG/M |
| 3300007960|Ga0099850_1064872 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC028P | 1538 | Open in IMG/M |
| 3300008012|Ga0075480_10052693 | Not Available | 2382 | Open in IMG/M |
| 3300008012|Ga0075480_10055923 | Not Available | 2298 | Open in IMG/M |
| 3300008012|Ga0075480_10422413 | Not Available | 653 | Open in IMG/M |
| 3300008012|Ga0075480_10446677 | Not Available | 630 | Open in IMG/M |
| 3300008012|Ga0075480_10612315 | Not Available | 514 | Open in IMG/M |
| 3300008221|Ga0114916_1055051 | Not Available | 1092 | Open in IMG/M |
| 3300009409|Ga0114993_10691616 | Not Available | 743 | Open in IMG/M |
| 3300009420|Ga0114994_10973195 | Not Available | 549 | Open in IMG/M |
| 3300009425|Ga0114997_10057066 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii | 2487 | Open in IMG/M |
| 3300010153|Ga0098059_1221387 | Not Available | 734 | Open in IMG/M |
| 3300010300|Ga0129351_1238266 | Not Available | 698 | Open in IMG/M |
| 3300010318|Ga0136656_1054731 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC028P | 1432 | Open in IMG/M |
| 3300010883|Ga0133547_10562498 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii | 2289 | Open in IMG/M |
| 3300017697|Ga0180120_10271106 | Not Available | 685 | Open in IMG/M |
| 3300017697|Ga0180120_10370461 | Not Available | 565 | Open in IMG/M |
| 3300017710|Ga0181403_1006967 | Not Available | 2457 | Open in IMG/M |
| 3300017713|Ga0181391_1010800 | Not Available | 2352 | Open in IMG/M |
| 3300017713|Ga0181391_1120989 | Not Available | 587 | Open in IMG/M |
| 3300017717|Ga0181404_1146561 | Not Available | 570 | Open in IMG/M |
| 3300017720|Ga0181383_1054071 | Not Available | 1078 | Open in IMG/M |
| 3300017728|Ga0181419_1048589 | Not Available | 1113 | Open in IMG/M |
| 3300017732|Ga0181415_1008797 | Not Available | 2420 | Open in IMG/M |
| 3300017732|Ga0181415_1060146 | Not Available | 861 | Open in IMG/M |
| 3300017735|Ga0181431_1025527 | Not Available | 1367 | Open in IMG/M |
| 3300017735|Ga0181431_1118472 | Not Available | 591 | Open in IMG/M |
| 3300017737|Ga0187218_1035431 | Not Available | 1270 | Open in IMG/M |
| 3300017741|Ga0181421_1155473 | Not Available | 591 | Open in IMG/M |
| 3300017743|Ga0181402_1010610 | Not Available | 2781 | Open in IMG/M |
| 3300017744|Ga0181397_1017247 | Not Available | 2152 | Open in IMG/M |
| 3300017749|Ga0181392_1013712 | Not Available | 2626 | Open in IMG/M |
| 3300017749|Ga0181392_1044089 | Not Available | 1379 | Open in IMG/M |
| 3300017752|Ga0181400_1063605 | Not Available | 1122 | Open in IMG/M |
| 3300021958|Ga0222718_10486733 | Not Available | 599 | Open in IMG/M |
| 3300021959|Ga0222716_10023821 | Not Available | 4521 | Open in IMG/M |
| 3300022057|Ga0212025_1030106 | Not Available | 912 | Open in IMG/M |
| 3300022167|Ga0212020_1044537 | Not Available | 753 | Open in IMG/M |
| 3300022176|Ga0212031_1023988 | Not Available | 963 | Open in IMG/M |
| 3300023245|Ga0222655_1029533 | Not Available | 919 | Open in IMG/M |
| 3300025120|Ga0209535_1075457 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii | 1302 | Open in IMG/M |
| 3300025120|Ga0209535_1213431 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC028P | 527 | Open in IMG/M |
| 3300025137|Ga0209336_10122491 | Not Available | 712 | Open in IMG/M |
| 3300025138|Ga0209634_1045696 | Not Available | 2196 | Open in IMG/M |
| 3300025138|Ga0209634_1094627 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii | 1337 | Open in IMG/M |
| 3300025138|Ga0209634_1188545 | Not Available | 801 | Open in IMG/M |
| 3300025168|Ga0209337_1116389 | Not Available | 1214 | Open in IMG/M |
| 3300025168|Ga0209337_1182731 | Not Available | 872 | Open in IMG/M |
| 3300025168|Ga0209337_1263793 | Not Available | 650 | Open in IMG/M |
| 3300025266|Ga0208032_1069099 | Not Available | 761 | Open in IMG/M |
| 3300025276|Ga0208814_1115729 | Not Available | 650 | Open in IMG/M |
| 3300025603|Ga0208414_1136379 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC028P | 621 | Open in IMG/M |
| 3300025603|Ga0208414_1136577 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 620 | Open in IMG/M |
| 3300025759|Ga0208899_1055236 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC028P | 1676 | Open in IMG/M |
| 3300025769|Ga0208767_1099112 | Not Available | 1172 | Open in IMG/M |
| 3300025815|Ga0208785_1092758 | Not Available | 757 | Open in IMG/M |
| 3300025818|Ga0208542_1107572 | Not Available | 795 | Open in IMG/M |
| 3300025840|Ga0208917_1293970 | Not Available | 506 | Open in IMG/M |
| 3300025889|Ga0208644_1403519 | Not Available | 502 | Open in IMG/M |
| 3300027522|Ga0209384_1043108 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii | 1255 | Open in IMG/M |
| 3300027522|Ga0209384_1079476 | Not Available | 816 | Open in IMG/M |
| 3300027672|Ga0209383_1068293 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii | 1268 | Open in IMG/M |
| 3300027704|Ga0209816_1139886 | Not Available | 880 | Open in IMG/M |
| 3300027844|Ga0209501_10739395 | Not Available | 525 | Open in IMG/M |
| 3300031621|Ga0302114_10310414 | Not Available | 616 | Open in IMG/M |
| 3300031705|Ga0308003_1226676 | Not Available | 556 | Open in IMG/M |
| 3300031851|Ga0315320_10088518 | Not Available | 2376 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 35.19% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 21.30% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 15.74% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 12.04% |
| Deep Ocean | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean | 3.70% |
| Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 3.70% |
| Saline Lake | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake | 2.78% |
| Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 1.85% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 0.93% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 0.93% |
| Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 0.93% |
| Saline Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water | 0.93% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001355 | Pelagic Microbial community sample from North Sea - COGITO 998_met_08 | Environmental | Open in IMG/M |
| 3300001450 | Marine viral communities from the Pacific Ocean - LP-53 | Environmental | Open in IMG/M |
| 3300001460 | Marine viral communities from the Pacific Ocean - LP-28 | Environmental | Open in IMG/M |
| 3300005933 | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE | Environmental | Open in IMG/M |
| 3300006025 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA | Environmental | Open in IMG/M |
| 3300006027 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA | Environmental | Open in IMG/M |
| 3300006164 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA | Environmental | Open in IMG/M |
| 3300006190 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA | Environmental | Open in IMG/M |
| 3300006193 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA | Environmental | Open in IMG/M |
| 3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
| 3300006810 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 | Environmental | Open in IMG/M |
| 3300006874 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA | Environmental | Open in IMG/M |
| 3300006916 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 | Environmental | Open in IMG/M |
| 3300006919 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 | Environmental | Open in IMG/M |
| 3300006921 | Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG | Environmental | Open in IMG/M |
| 3300006947 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA | Environmental | Open in IMG/M |
| 3300007344 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 | Environmental | Open in IMG/M |
| 3300007345 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 | Environmental | Open in IMG/M |
| 3300007346 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 | Environmental | Open in IMG/M |
| 3300007538 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG | Environmental | Open in IMG/M |
| 3300007539 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG | Environmental | Open in IMG/M |
| 3300007640 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 | Environmental | Open in IMG/M |
| 3300007960 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG | Environmental | Open in IMG/M |
| 3300008012 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA | Environmental | Open in IMG/M |
| 3300008221 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 | Environmental | Open in IMG/M |
| 3300009409 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 | Environmental | Open in IMG/M |
| 3300009420 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 | Environmental | Open in IMG/M |
| 3300009425 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 | Environmental | Open in IMG/M |
| 3300009428 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 | Environmental | Open in IMG/M |
| 3300010153 | Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG | Environmental | Open in IMG/M |
| 3300010300 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA | Environmental | Open in IMG/M |
| 3300010318 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNA | Environmental | Open in IMG/M |
| 3300010883 | western Arctic Ocean co-assembly | Environmental | Open in IMG/M |
| 3300017697 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2) | Environmental | Open in IMG/M |
| 3300017710 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28 | Environmental | Open in IMG/M |
| 3300017713 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 | Environmental | Open in IMG/M |
| 3300017717 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25 | Environmental | Open in IMG/M |
| 3300017720 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 | Environmental | Open in IMG/M |
| 3300017728 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24 | Environmental | Open in IMG/M |
| 3300017732 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11 | Environmental | Open in IMG/M |
| 3300017735 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21 | Environmental | Open in IMG/M |
| 3300017737 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2) | Environmental | Open in IMG/M |
| 3300017741 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19 | Environmental | Open in IMG/M |
| 3300017743 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17 | Environmental | Open in IMG/M |
| 3300017744 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23 | Environmental | Open in IMG/M |
| 3300017749 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 | Environmental | Open in IMG/M |
| 3300017752 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22 | Environmental | Open in IMG/M |
| 3300021958 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D | Environmental | Open in IMG/M |
| 3300021959 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D | Environmental | Open in IMG/M |
| 3300022057 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2) | Environmental | Open in IMG/M |
| 3300022167 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2) | Environmental | Open in IMG/M |
| 3300022176 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2) | Environmental | Open in IMG/M |
| 3300023245 | Saline water microbial communities from Ace Lake, Antarctica - #423 | Environmental | Open in IMG/M |
| 3300025118 | Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025120 | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) | Environmental | Open in IMG/M |
| 3300025137 | Marine viral communities from the Pacific Ocean - LP-32 (SPAdes) | Environmental | Open in IMG/M |
| 3300025138 | Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) | Environmental | Open in IMG/M |
| 3300025168 | Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) | Environmental | Open in IMG/M |
| 3300025266 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes) | Environmental | Open in IMG/M |
| 3300025276 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes) | Environmental | Open in IMG/M |
| 3300025603 | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE (SPAdes) | Environmental | Open in IMG/M |
| 3300025759 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes) | Environmental | Open in IMG/M |
| 3300025769 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes) | Environmental | Open in IMG/M |
| 3300025815 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025818 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025840 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025889 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) | Environmental | Open in IMG/M |
| 3300027522 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027672 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027704 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027844 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes) | Environmental | Open in IMG/M |
| 3300031621 | Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface | Environmental | Open in IMG/M |
| 3300031705 | Marine microbial communities from water near the shore, Antarctic Ocean - #36 | Environmental | Open in IMG/M |
| 3300031851 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI20158J14315_101402141 | 3300001355 | Pelagic Marine | MIKQTQIIDPLETLQQDGFQKLNELLQINHHSPTSSSMPLGIYAFRYLFS |
| JGI24006J15134_100342064 | 3300001450 | Marine | MILKTNKIVDPLETLQQDGFQKLNELLKINHHSPTSSSMP |
| JGI24006J15134_100435631 | 3300001450 | Marine | MILKTKLTDPLQELQLDGFKKLNELLKINHHSPTSSSMPEGIYAF |
| JGI24006J15134_101437963 | 3300001450 | Marine | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTSSSMPEGIYAF |
| JGI24003J15210_101204053 | 3300001460 | Marine | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTSSSMPEGI |
| Ga0075118_101801203 | 3300005933 | Saline Lake | MIKQTKIIDPLETLQQDGFKKLNELLNINHHSPTSSSMPLGIYVARYL |
| Ga0075474_101079633 | 3300006025 | Aqueous | MILKQKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYAFRY |
| Ga0075462_101778311 | 3300006027 | Aqueous | MLIRNKKIIDPLETLQQDGFTKLNELLKINHHSPTS |
| Ga0075462_101915361 | 3300006027 | Aqueous | MILKQKKIIDPLETLQQDGFTKLNELLKINHHSPT |
| Ga0075441_100491763 | 3300006164 | Marine | MIKQTQIIDPLETLQQDGFKKLNELLKINHHSPTSSSMP |
| Ga0075441_100882291 | 3300006164 | Marine | MIKQTQIIDPLKELLLSGNENLTSFEKLNELLKINHHSPT |
| Ga0075441_103208713 | 3300006164 | Marine | MIKQTQIIDPLDGLQQDGFKKLNELLKVNHHSPTSSSMP |
| Ga0075446_100215601 | 3300006190 | Marine | MIKQTQIIDPLKELLLSGNENLTSFEKLNELLKINHHS |
| Ga0075446_101614533 | 3300006190 | Marine | MIKQTQIIDPLQELRLDGFQKLNELLKVNHHSPTSSSMPLGIYAFRY |
| Ga0075445_103367161 | 3300006193 | Marine | MIKQTQIIDPLQELRLDGFQKLNELLKVNHHSPTSSSMPLGIYAF |
| Ga0070749_102401621 | 3300006802 | Aqueous | MILKTKITDPLQELELDGFKKLNELLKINHHSPTSSSMPLGVYAFR |
| Ga0070754_101033621 | 3300006810 | Aqueous | MIIRNTKIIDPLETLQQDGFTKLNELLKINHHSPTS |
| Ga0070754_103967413 | 3300006810 | Aqueous | MIKQTQIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGIYAFRYL |
| Ga0070754_105148251 | 3300006810 | Aqueous | MILKTKITDPLQELQLDGFKKLNELLKINHHSPTSSSMPLG |
| Ga0075475_104078441 | 3300006874 | Aqueous | MLIRNTKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPL |
| Ga0070750_100384224 | 3300006916 | Aqueous | MLIRNKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPL |
| Ga0070750_100588053 | 3300006916 | Aqueous | MILKTKLIDPLEELKLDGFQKLNELLKINHHSPTS |
| Ga0070746_100465361 | 3300006919 | Aqueous | MLIRNKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSM |
| Ga0070746_100478823 | 3300006919 | Aqueous | MILKTKLIDPLEELKLDGFQKLNELLKINHHSPTSSSM |
| Ga0070746_101508041 | 3300006919 | Aqueous | MLIRNTKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGV |
| Ga0098060_10944431 | 3300006921 | Marine | MILKNKITDPLQDLQLDSFTKLNNLLKINHHSPSAAQLPLGFYVFSRLF |
| Ga0098060_11629061 | 3300006921 | Marine | MILKTKLTDPLQELQLDGFKKLNELLKINHHSPTSSS |
| Ga0075444_100762793 | 3300006947 | Marine | MIKQTQIIDPLDGLQQDGFKKLNELLKVNHHSPTSSSMALRI* |
| Ga0075444_101698191 | 3300006947 | Marine | MIKQTQIIDPLETLQQDGFKKLNELLKINHHSPTSSSMPLGIYA |
| Ga0075444_102357113 | 3300006947 | Marine | MIKQTQIIDPLDGLQQDGFKKLNELLKVNHHSPTSSSMPLGIYAFRYLFSTQE |
| Ga0070745_11128543 | 3300007344 | Aqueous | MILKQKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYAFRYL |
| Ga0070745_11849143 | 3300007344 | Aqueous | MILKQKKIIDPLETLQQDGFTKLNELLKINHHSPTSSS |
| Ga0070752_10402381 | 3300007345 | Aqueous | MILKTKLIDPLEELKLDGFQKLNELLKINHHSPTSSSMPEG |
| Ga0070752_12107953 | 3300007345 | Aqueous | MLIKQKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYAFRYLFSTQ |
| Ga0070752_12524821 | 3300007345 | Aqueous | MLIRNKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGV |
| Ga0070753_10267271 | 3300007346 | Aqueous | MLIKQKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYAFRY |
| Ga0099851_10662991 | 3300007538 | Aqueous | MLIRNTKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYA |
| Ga0099849_10335051 | 3300007539 | Aqueous | MILKQKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGV |
| Ga0099849_11937501 | 3300007539 | Aqueous | MIIRNTKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYA |
| Ga0070751_10645241 | 3300007640 | Aqueous | MLIRNTKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYAF |
| Ga0099850_10648721 | 3300007960 | Aqueous | MLIRNKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMP |
| Ga0075480_100526934 | 3300008012 | Aqueous | MLIRNKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYAFRYL |
| Ga0075480_100559234 | 3300008012 | Aqueous | MLIRNTKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYAFRYL |
| Ga0075480_104224133 | 3300008012 | Aqueous | MILKTKLIDPLEELKLDGFQKLNELLKINHHSPTSSSMP |
| Ga0075480_104466772 | 3300008012 | Aqueous | MILKQTKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVY |
| Ga0075480_106123152 | 3300008012 | Aqueous | MILKTKIIDPLQELQLDGFKKLNELLKINHHSPTSSSMPLGVYAF |
| Ga0114916_10550513 | 3300008221 | Deep Ocean | MIKQTQIIDPLDGLQQDGFKKLNELLKVNHHSPTSSSMPLGIYAFR |
| Ga0114993_106916163 | 3300009409 | Marine | MIIKQTKIIDPLETLQQDGFKKLNELLKINHHSPTSS |
| Ga0114994_109731951 | 3300009420 | Marine | MILKNKIQDPLEDLRLDSFTKLNELLKINHHSPSASGLPLGFYVYSRLFCTQA |
| Ga0114997_100570664 | 3300009425 | Marine | MIKQTQIIDPLETLQQDGFKKLNELLQINHHSPTSSS |
| Ga0114915_11411811 | 3300009428 | Deep Ocean | MIKQTQIIDPLKELLLSGNENLTSFEKLNELLKINHHSP |
| Ga0098059_12213871 | 3300010153 | Marine | MILKTNKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPEGVYA |
| Ga0129351_12382662 | 3300010300 | Freshwater To Marine Saline Gradient | MILKQKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYAF |
| Ga0136656_10547311 | 3300010318 | Freshwater To Marine Saline Gradient | MLIRNKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYA |
| Ga0133547_105624984 | 3300010883 | Marine | MIKQTQIIDPLETLQQDGFKKLNELLKINHHSPTSSSMPL |
| Ga0180120_102711063 | 3300017697 | Freshwater To Marine Saline Gradient | MILKTKLIDPLEELKLDGFQKLNELLKINHHSPTSSSMPE |
| Ga0180120_103704612 | 3300017697 | Freshwater To Marine Saline Gradient | MILKTKLIDPLEELKLDGFQKLNELLKINHHSPTSSSMPEGIYA |
| Ga0181403_10069674 | 3300017710 | Seawater | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTS |
| Ga0181391_10108004 | 3300017713 | Seawater | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTSSSMPEGIYAFRYLFS |
| Ga0181391_11209893 | 3300017713 | Seawater | MILKTNKIIDPLETLQQDGFQKLNELLKINHHSPTSSSMPEGIY |
| Ga0181404_11465611 | 3300017717 | Seawater | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTSSSMPEGIYAFRYLF |
| Ga0181383_10540713 | 3300017720 | Seawater | MILKTKLIDPLQELQLDSFQKLNELLKINHHSPTSSSM |
| Ga0181419_10485893 | 3300017728 | Seawater | MILKTKLIDPLEELKLNGFQKLNDLLKINHNSPLSSSIPL |
| Ga0181415_10087973 | 3300017732 | Seawater | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTSSSMPEGIYAFRY |
| Ga0181415_10601463 | 3300017732 | Seawater | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTSSSMPEGVY |
| Ga0181431_10255273 | 3300017735 | Seawater | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTSSSMPEGIYAFR |
| Ga0181431_11184722 | 3300017735 | Seawater | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPT |
| Ga0187218_10354311 | 3300017737 | Seawater | MILKTNKIIDPLETLQQDGFQKLNELLKINHHSPTSSSMPEGIYAFRY |
| Ga0181421_11554731 | 3300017741 | Seawater | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTSSSMPEGIYA |
| Ga0181402_10106104 | 3300017743 | Seawater | MILKTKLIDPLEELKLDGFQKLNELLKINHHSPTSSSMPEGIY |
| Ga0181397_10172471 | 3300017744 | Seawater | MILKTNKIIDPLETLQQDGFQKLNELLKINHHSPTSSSMPEGIYAFRYLF |
| Ga0181392_10137124 | 3300017749 | Seawater | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTSSSMPEGIYAFRYLFFQKL |
| Ga0181392_10440891 | 3300017749 | Seawater | MILKTKLIDPLQELQLDGFQKLNELLNINHHSPTSS |
| Ga0181400_10636053 | 3300017752 | Seawater | MILKTKLIDPLEELKLDGFQKLNELLKINHHSPTSSSMPEGIYAF |
| Ga0222718_104867331 | 3300021958 | Estuarine Water | MNIKLNKIIDPLETLQQDGFTKLNELLKINHHSPTSSSM |
| Ga0222716_100238211 | 3300021959 | Estuarine Water | MLIRNTKIIDPLETLQQDGFTKLNELLKINHHSPTSSS |
| Ga0212025_10301063 | 3300022057 | Aqueous | MILKQKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPL |
| Ga0212020_10445371 | 3300022167 | Aqueous | MLIRNKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLG |
| Ga0212031_10239881 | 3300022176 | Aqueous | MIIRNTKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYAFRYLF |
| Ga0222655_10295331 | 3300023245 | Saline Water | MIKQTKIIDPLKELLLSGNENLTSFEKLNELLKINHHSPTSSSMPLGI |
| Ga0208790_12118931 | 3300025118 | Marine | MIIQNKITDPLKELLLSGNENLTSFQKLNSLLKINHHSPTSASMP |
| Ga0209535_10754571 | 3300025120 | Marine | MIKQTQIIDPLETLQQDGFEKLNELLKINHHSPTSSSMPEGIY |
| Ga0209535_12134312 | 3300025120 | Marine | MIKQTQIIDPLETLQQDGFQKLNELLKINHHSPTSSSMPL |
| Ga0209336_101224911 | 3300025137 | Marine | MILKTNKIIDPLETLQQDGFQKLNELLQVNHHSPTSSSMPEGIY |
| Ga0209634_10456964 | 3300025138 | Marine | MILKTKLTDPLQELQLDGFKKLNELLKINHHSPTSSSMPEGI |
| Ga0209634_10946273 | 3300025138 | Marine | MILKTKLTDPLQELQLDGFKKLNELLKINHHSPTS |
| Ga0209634_11885451 | 3300025138 | Marine | MIKQTQIIDPLETLQQDGFQKLNELLKINHHSPTSSSMP |
| Ga0209337_11163891 | 3300025168 | Marine | MIKQTQIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPL |
| Ga0209337_11827313 | 3300025168 | Marine | MILKTNKIVDPLETLQQDGFQKLNELLKINHHSPTSSSMPEG |
| Ga0209337_12637931 | 3300025168 | Marine | MIKQTQIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGIY |
| Ga0208032_10690991 | 3300025266 | Deep Ocean | MIKQTQIIDPLDGLQQDGFKKLNELLKVNHHSPTSSSMPLGIYAFRY |
| Ga0208814_11157293 | 3300025276 | Deep Ocean | MIKQTKIIDPLDGLQQDGFKKLNELLKVNHHSPTSSSMPLGIYAF |
| Ga0208414_11363791 | 3300025603 | Saline Lake | MITKIQNEVKNLVKQNKIIDPLETLQQDGFQKLNDLLKINHHSPTSSSMPLGIYVARYLLSTQ |
| Ga0208414_11365771 | 3300025603 | Saline Lake | MIKQTKIIDPLKELLLSGNENLTSFEKLNELLKINHHSPTSSSMPLGIY |
| Ga0208899_10552363 | 3300025759 | Aqueous | MILKQKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLG |
| Ga0208767_10991123 | 3300025769 | Aqueous | MLIRNTKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMP |
| Ga0208785_10927581 | 3300025815 | Aqueous | MILKQKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVY |
| Ga0208542_11075723 | 3300025818 | Aqueous | MLIRNKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYAFRY |
| Ga0208917_12939702 | 3300025840 | Aqueous | MLIRNTKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYAFR |
| Ga0208644_14035191 | 3300025889 | Aqueous | MILKQKKIIDPLETLQQDGFTKLNELLKINHHSPTSSSMPLGVYT |
| Ga0209384_10431081 | 3300027522 | Marine | MIKQTQIIDPLDGLQQDGFKKLNELLKVNHHSPTSSSMPLG |
| Ga0209384_10794763 | 3300027522 | Marine | MIIKNKVSDPLEDLRLDSFTKLNELLKINHHSPSASGLPLGF |
| Ga0209383_10682933 | 3300027672 | Marine | MIKQTQIIDPLDGLQQDGFKKLNELLKVNHHSPTSS |
| Ga0209816_11398863 | 3300027704 | Marine | MIKQTQIIDPLDGLQQDGFKKLNELLKVNHHSPTSSSMPLGIYAF |
| Ga0209501_107393951 | 3300027844 | Marine | MIIKQTKIIDPLETLQQDGFKKLNELLKINHHSPTSSSMPL |
| Ga0302114_103104141 | 3300031621 | Marine | MIKQTKIIDPLKELLLSGNESLTSFEKLNELLKINHHSPTSSSMPLGIYAFRYLFTTQEE |
| Ga0308003_12266761 | 3300031705 | Marine | MIKQTQIIDPLKELLLSGNENLTSFEKLNELLKINHHSPTSSSMPLGIYAFRYLLSTQEQ |
| Ga0315320_100885184 | 3300031851 | Seawater | MILKTNKLIDPLETLQQDGFTKLNELLKINHHSPTSSS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |