NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315320_10043324

Scaffold Ga0315320_10043324


Overview

Basic Information
Taxon OID3300031851 Open in IMG/M
Scaffold IDGa0315320_10043324 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3533
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002182Metagenome / Metatranscriptome586Y
F018084Metagenome237Y
F080233Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0315320_100433243F080233N/AMFYIWHTLIIATFIAVAYYMGYHYGGQKAKVKKTVRKS
Ga0315320_100433248F002182AGGAMIYTDQEHEWLSKPKKKRVSNQTADGSAPVKKDMRKHDWAIKTTIEVNGKQYVVPVQV
Ga0315320_100433249F018084N/AGQIERNIDMVKTALVIVAMLVCPGIIMGLISSYRAGQKPHRDLYRQLQKFTHRKK

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