Scaffold Ga0308409_1009532

Overview

Basic Information

• Taxon OID: 3300031830
• Scaffold ID: Ga0308409_1009532
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3154
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004791	Metagenome / Metatranscriptome	423	Y
F081390	Metagenome / Metatranscriptome	114	Y
F093914	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308409_10095322	F081390	N/A	MCSDYLLVPPLRAQRREVLRDALERQTVKRVGRAVIDVPAQH
Ga0308409_10095323	F004791	AGGAGG	MDKPVEIYDIETIRVDRSALSIRDAASVLNNELTAPVVARLVRKAIGNQADRFPLRSLKAVYERVLPQIFEPDEAVRSRVAGLVPAVGEITLGEYHQFLDASERKIAFPEVAKTLLIKAYGEDILNEPYAAAALLLRKIFDAVGDEGNE
Ga0308409_10095324	F093914	N/A	ELTLTFLYNEAANSAANTIFDRFQSATPTLGVRWSPRGLVGSARAYGTSNDGGTTFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSSPTNLNPAP