Scaffold Ga0307473_10022843

Overview

Basic Information

• Taxon OID: 3300031820
• Scaffold ID: Ga0307473_10022843
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2585
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001831	Metagenome / Metatranscriptome	628	Y
F063457	Metagenome	129	Y
F089991	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307473_100228432	F089991	AGG	MAKSPPEKKAPPELRVLPMELKLGDRLADERSEWQVIGRPYTTAGGKTAHVRVESLNNPGVTEIRSWGSHERVGVKRDETKGS
Ga0307473_100228433	F063457	GGA	VLVSYRLRKTGQVRGFAIVLPADADPHLVPTSAVIKCLADASGVAPEEIELLDLWNER
Ga0307473_100228434	F001831	GAG	VEREVTAGLALFLSACAIANTPQQELAYARWARCNSPAGRLERIDLDGRITFKYSSAGGRQEVLQCLADAGRAGPPLPEPVAVGLGGGP