Scaffold Ga0308411_10008901

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10008901
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6239
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002795	Metagenome / Metatranscriptome	529	Y
F008135	Metagenome / Metatranscriptome	338	Y
F054900	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_1000890110	F002795	GGAGG	MATNSGLVLRGMVAAYREFVSRKDGRLFRVITVFGDLVVGEAVLCAVDGYDVFVDTPGYARGEMVELPARMQFLRDGSGRPVIRLYVDEGVR
Ga0308411_1000890111	F008135	N/A	MRAVNDPRTERLLVSAGTSIARVLDARQRHAVALAIEVCWYIVAALPPDGSVTFGDVVRLLRWFARGFNEDVEVDDGDE
Ga0308411_100089012	F054900	AGGA	MISHGCANIGAMEYERAMLQLLVYGVTLFMLYAVDRWYRG