Scaffold Ga0308411_10002156

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10002156
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13391
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F012577	Metagenome / Metatranscriptome	279	Y
F067304	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_1000215610	F067304	N/A	MCSDQLLMPPLCAQRRKMLRDAPERLTVKRVGRAVVDVSAQHQFGVRGGQRREVEQT
Ga0308411_1000215613	F012577	GAGG	MLVAIAEPHQQFPVPLTVADYEFSTFDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWHALGFGALQREARISVVRNMFDMRRWKPVGSGFMAGSGYDSRGDLWEYQIISYGALPHIQIRTKKTFTFSPTRLFFVAYLYDQPERYTSITSTERIQISGLFDPQATGFLVAPVTAIPQPTGYTLTLGSFTTVGTFGIVTAPSTCYGWVVGVNASGAETTAGATSGLFIATINPHPPNGIDASLLSTALTNQGGSCTVHLPNATHVSLEKPDANLREIIEQNEVGLKYSHKRFLRDRPLPTIDFRTDSTLTWRFPETTRVIDISKAPSRIFAQYRGYWTDHLTATTTIQSLESRRQLARRVAGVGEYGSKTTADARRDEAAIALDRQIAPITVELDNSRYELMTREGVAVPNWAADVSDYVIVPGYYRNAKITARVITRERTTYTVSFNPDDFVTAL
Ga0308411_100021568	F005302	AGGAGG	MAHTGVIDGLFAGNFAVEISTNLTNWTAVSNATVKIDDVELNRPSGEAFVGGSSDYATVTIGKREPIELTLTFLYNEASGSAANTIFDRFQSATPTLAVRWSPRGLVSQARAYATSNDGGAATGLGVITNVTLSTLDPSDAEPYVAMVTVRTPSLRQYTLGNSPTDLS
Ga0308411_100021569	F004791	AGGAGG	MDKPAEIYDIDAIRVDRSALTIRDAASVLNNELTAPVVARLVRKAIGDQADRFPLRALKAVYERVLPQIFEPDEAVRSRVAGLVPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDSIGDEGNE