Scaffold Ga0308411_10000680

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10000680
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22768
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (71.88%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022604	Metagenome / Metatranscriptome	213	N
F025421	Metagenome / Metatranscriptome	201	Y
F028964	Metagenome / Metatranscriptome	190	N
F029920	Metagenome	187	Y
F031690	Metagenome / Metatranscriptome	182	Y
F038570	Metagenome / Metatranscriptome	165	N
F042758	Metagenome / Metatranscriptome	157	N
F059420	Metagenome	134	Y
F093039	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_1000068011	F042758	AGGAG	MKPTDFLNIAGRLPAQAITGATDTTSVDMQLLRGVAAVCIVGTASTPPSFKIQSSADNSTFADLTGKSITSVAANSEGIINVRDEDLPDGHRWIRAAVNGNATVAVVFIGTSARNNPPAKLASTTIVD
Ga0308411_100006802	F028964	N/A	MIGAEVTIALTSLRSPGTRVGALALSGSFERRAMEVAECELEISVRAPSYELSAYGDVLLVMLPNRREYYFITAIERRNTYYVLRGETFLRYLRDYYPDRYAGTADAQWSGDAAAGVLRSLRPIEYVPVHSFSLSFRDYWIITPNNVPPSVNVSTSFAWASRLEAAQEITRLAHAQGFPLVWWFEPGGWYGTQPSVALVFSHGLPRNGLFRPRWASSIKYDAWVYDRSQPTAGVALGYGHGEDRDVTRARAARGLFNGWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGSGQAYSQEMPRLGDQVFLVAGEHQRCAGIAHVVSERYTVTGGQVSSAEVGVVQI
Ga0308411_1000068025	F031690	AGGAG	MNPNTYPKNLLYCASFDVVVGTERSRLYLLASNAEQAAKYVWPTKTRKRTRYVVSCERLAGLQSAEEIESAALLYGFKHNHPHICEVMERHKSLASVIIETWTLRWALSLLQDDDAAKTVTINDKGLSIQGVTLGGIALYSAEMLVRSRPLRFAFEQMPHDETAQVDILGRRHARALKISLGAETHYVFDYRNGFTAFIPREEER
Ga0308411_1000068026	F029920	N/A	MISTHALERAFREERPLKGFIAPGLALSYQPREYLAIGRIERQPDADDIAQVVALAREAFIFLAREPQHEVIELNGITWHLARWLLKRESVADHLPQSKRRNR
Ga0308411_100006803	F059420	GGAGG	MEIELFRGSSALTTLHYRTVPGQYSWVLRDFQGDLMDEVEVLTREALGGRTLVAGQQGRARRIVIVLDVQGTSMVNLHAAIRELESHVRWRKGTPLELRVRAQATNPWSKTEVVLEQMSAQFEDDQYRATVTLRFACRSVYWQEFISTVSASNNTLTGNAFVVNLSTMTFTPITGITEAISNIDYRAASNEWIIFTTSQVWRAPATGGAAALIGSLSGSTALRGCVTHDGNILAVAQGVNFLVRFTYPSSGPTGLGTFNGVPVRVRRFGNTYVSVGEFSQFQTTGGLAGMVTTDVNGNVINPFSPFPTSVVFPGGGRIRDVLIKEDIGIAIAYRATSPSQSWVVVWSGQVAPYYVAEGASTWGPFEIDQSSSIDDVTICADSWIHAGRTFNTLCRLRNLSGIVPYAYPTASIGGVQDGCAVERFTFATSEPRKAFRLGDDGTAMPLFTTSANSIAVRRVGNLMCIGYVATANVWTPLNVDVGSIANTGATAEIVPRLGGLAVPVFGCYSKVDTEILGEVIDPQTQAENYEPKYHSGGVVTPLPGTNYERMFRGSMNEGVTRYSFAVGGSVTSTVTFNRYKHDWR
Ga0308411_100006805	F093039	GAG	VTLLLHLAETWGVPPWVLEQELSLFWAEAACEWEREKARQMKRAMRKHGGR
Ga0308411_100006806	F025421	N/A	MIDLSKVRRIDRNAPGSFMEYARLQAIISEGDLMAIARALESYGVNLHELSFNELTDVIKHIAGEPTPLGDTSATA
Ga0308411_100006807	F038570	AGGAG	MPATHLRRVQLGQQTAFATPVAATSILRGVKDGSVTINHDDAVVEELGRSVSDLIVFSQRHAEGELELQCTYEDILYGLFGLFGPVAPSGGARTFNAPITNYAAPQIYTIEYGAPGAEYRVVGGIIREWTLRYEANAGVTESWSFIGRSVQANALTGSLPTRVVTPVVSAHASWFMDNIGTAHGTTPIPGTVIEAELSINTNRHLKMFEGSQPITWGEGRWEAQLTLTAEFNATTKTWVDGLLINPVARNFRVNFVETPGTRELRIDFVGLLAEPIELFGDRDGNMTAELTFKALVAAPLNNWLQIRTINGIATLP
Ga0308411_100006809	F022604	GAGG	MLSAVNAVHAVVAAVPGIVAAYTTVPMSANTPALPMALVTPVSENRRQHAHELVRIETLVRVRIVHSPVAQGITELQQSALYALADAVMTALTDDITLGGQVDHVASVDADEPAIYTLAGTDYLSISVLARVVEKI