Scaffold Ga0310125_10176220

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0310125_10176220

Scaffold Ga0310125_10176220

Overview

Basic Information
Taxon OID	3300031811 Open in IMG/M
Scaffold ID	Ga0310125_10176220 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1103
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	79.9957	Long. (^o)	-149.9767	Alt. (m)		Depth (m)	432
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016285	Metagenome	248	Y
F090868	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310125_101762203	F090868	AGGA	MKNTKQLYHKLVKRGIINKDIQMKEVKKIFHDVSKYNAKEDLKKIYEKK
Ga0310125_101762204	F016285	N/A	YVGGGTVIKKLKMEILLWIQGWSGQLNGWAWTKWDKLHREDWLKGYRKWNNEKH

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.