Scaffold Ga0310121_10118802

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10118802
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1675
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051207	Metagenome / Metatranscriptome	144	Y
F084353	Metagenome / Metatranscriptome	112	N
F103414	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_101188022	F084353	N/A	MDWKRKKTVIPKCDCSIHDVVSGIIEYLIITPIFAIGYLTVTIPWMLFVIGLDSDQFANFVWQSVMVDLVVAYPLAKLVMKLKPRIERISKLGH
Ga0310121_101188023	F103414	AGG	LSSFIFRAAGFNEIINILKETNVKLGNIEKLMEFLLSPPDLVKYKKGMKFDDVPRKSFSDRA
Ga0310121_101188024	F051207	N/A	MASSIYIYTKREDYENLYRGKIEAYTYQTPILDFFIRPTEGYDVDDSIPTNKLWVITHTDKVKIRPSLERSIVHFNNGSCFDFLSGSELQVEKDKVFYNPKNNQLEFYPRKLRKPLLSLRVDKVIGGKPSKKSKINYKAKYYDMTHDRLNLFV