NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10033276

Scaffold Ga0310121_10033276


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10033276 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3597
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001235Metagenome / Metatranscriptome741Y
F051207Metagenome / Metatranscriptome144Y
F084353Metagenome / Metatranscriptome112N
F103414Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100332765F051207N/AMASSIYIYTSRNDYDNLYKGKTEAYTYETPILDFFIRPTDGYDVDDSILTNKLWVVTQTDKVKMRPSLERTIVHFSNGSCFDFINGNELQVEKDKVFYNPKTNQLEFYPRKLRSPLLSLKVDKVIGGKPPKKSKVNFRAKYYDMTHDRLNLFV
Ga0310121_100332766F103414AGGLSSFIFRAAGFSEIVRLLTETNKRLSNMERLLEFLLSPPDLKKYKKGMSFDSLPRKPFSDQA
Ga0310121_100332767F084353N/AMDWKRKKTIVPRCDCSIHDVISGIVEYLIITPIFAIGYLTVTIPWMLFVIGLDADQFANFVWQSVMVDLVVAYPLAKLVMRLKPRIERIAKLGH
Ga0310121_100332768F001235GAGLATKLNVDTGGLDIGKKLWAKHQADEYTHVDNYKEALCINCFSKDASAATIVDICGECAGKRGREPLLATVTQKMYGLCFFCGKHRFNIEQINARFCRKCHRKIANVTKEYNKKGGMFGADPFWISMRKKHGKDWKHIMDKNLGNRR

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