NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318523_10632512

Scaffold Ga0318523_10632512


Overview

Basic Information
Taxon OID3300031798 Open in IMG/M
Scaffold IDGa0318523_10632512 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006159Metagenome / Metatranscriptome380Y
F042482Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0318523_106325121F006159N/AGTECEIHGYSAMQRAWDIELIFPIKDAASAALMVVKADCLYNAGVISDGEKQWVYSRARPFLADGTLKDAA
Ga0318523_106325122F042482AGGMFVKAEGPSGPAKIHSDDPKHALGLVQYLRAIGYNVWIEDANGNEIAKRH

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