NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318529_10496260

Scaffold Ga0318529_10496260


Overview

Basic Information
Taxon OID3300031792 Open in IMG/M
Scaffold IDGa0318529_10496260 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018019Metagenome / Metatranscriptome237Y
F050070Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0318529_104962601F050070AGGGGGMDAKAELSEALRPGCGCLGRAALDEPVFILRAQDILAPRVVVRWAHLAERAGSPQDKERAALQVAKQIADWQANNQHCVK
Ga0318529_104962602F018019N/AWKYDRRVADPTVLDKVKVGDQADITWDTNVTVAVQ

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