Scaffold Ga0315900_10037531

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10037531
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5282
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F028460	Metagenome / Metatranscriptome	191	Y
F037113	Metagenome / Metatranscriptome	168	Y
F093487	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_100375311	F037113	N/A	GGSEINWQHYTHKIDAERVAEFWREVKGYDDVVVGEVE
Ga0315900_1003753114	F093487	AGGAG	MAVAIRTLRRRRRTAQRGKSMSQSQRWGKVVTTMPVPGGEITTTEILVPVVEEVVETTEEETKDEA
Ga0315900_1003753117	F028460	N/A	TEACVMVLHHVSEQSEYGSPSNPPHRRAIHGKVSQLPALILTLGYDPSQGILKVAPVKNRFGEHTADGSKYAQLLVNYAAVQISDQNEFGWMLRKDTIAGYQGGYNV
Ga0315900_100375314	F001477	AGGAGG	VSNVYTIHPKKSDLILFYEVLTPEGENEWGGANAEQCIQWLSLAPSGSRVLVSAWDSDEEDAHLVGQTIDVTEIIQQARQVGR