Scaffold Ga0315899_11081411

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_11081411
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 705
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F007644	Metagenome / Metatranscriptome	347	Y
F059952	Metagenome / Metatranscriptome	133	N
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_110814111	F059952	N/A	INNNLDEGQYYADKQFAEMSGDKFIYDEFNKFYNLKEGDEDYLC
Ga0315899_110814112	F001460	GAGG	MLGYTEEDLNRMINAIHDVKLFYLRSPSDLMNKDPLVKDLEDTVSFMQGLWAEGYFD
Ga0315899_110814113	F007644	GGAGG	LTKSSRFLEYMKLHLISLEQDLDKHRPEDVLLVEYIEGQIVATRHLLSVATDIMNNSNERYNND
Ga0315899_110814114	F082666	AGG	MIETAEALPESIQRAVDLGISGIDIMHGELKIMMLVAEQELANAQAIEDETEEAMDSMERKYWEGQLDALVELY