Scaffold Ga0315899_10928992

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10928992
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 781
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F073544	Metagenome / Metatranscriptome	120	Y
F080048	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_109289922	F000473	AGG	MEFINKDKDHFKHGINLWNGEPNKPVFYTKEMSLKIREIKKPVSDLMLDVVQYPEFLAVRLYEDNFVQYEGIKKEQVIDYVGKVKKLIESYGVRCELEGVPSARILRSN
Ga0315899_109289923	F073544	AGG	VREYYEVINIVFIHEGRLWGTCESLGLYASKIKYQKDGIEYEEMFDNEEFTVMEEIVIEHLEEEN
Ga0315899_109289924	F080048	GAGG	MEKILCYCCNKTKNKLSLKKSSLIPINLFMCETCISSKFEPRWVIILAGRQLGSDSVKEFII