Scaffold Ga0315899_10394173

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10394173
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1348
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F006744	Metagenome / Metatranscriptome	365	Y
F038205	Metagenome / Metatranscriptome	166	Y
F076101	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_103941735	F076101	GGA	MYKITLSYDGNAPHMQWDYANEFDAWKDFFSFTDWGFANEYSTVNIYNSEMKCFTKIFYREERKVVTVK
Ga0315899_103941736	F038205	GGA	MAKVKEYLEIIAVDCNECNGAGFIFFGSDNNYDVESCDCVLESWEI
Ga0315899_103941737	F006744	AGGAG	MNLDEFKAHITATRQASKAEALSVLSATITKTNEGENLNG
Ga0315899_103941738	F000447	N/A	GFIEFARIDSEGVSWVDLSKATPDELFQIEIGLLNEGAFE