Scaffold Ga0315899_10047393

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10047393
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4504
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015581	Metagenome / Metatranscriptome	253	Y
F024308	Metagenome / Metatranscriptome	206	N
F044443	Metagenome / Metatranscriptome	154	N
F062754	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1004739311	F015581	N/A	MLMVQDNFAVNVLKNMNELTKPNAFVFKAYIDGEYRLCVCPRINNKWSEADIVYVKDDPYKEFDEVLDNKLFSIVFVGYTPDESGNGFNIRNVNSQYIKSDKSIASEMYANNSFFETIEQGYQLFYEQPERQGEQTQTNQ
Ga0315899_1004739312	F024308	N/A	VKKVILSKIEYEFLVECLEKLEKQTDNSPADPKWFEKMDATQRLYELEMEYYKIKKYGEPSTKYDMVRWLLTKVKNKTLDF
Ga0315899_100473932	F062754	AGCAG	MKKQTKKEKEEIKMKLAYFDRLVKQTRELIKQGYTVPDLNSLVRINR
Ga0315899_100473937	F044443	N/A	MLNRIIEQFKYKLYTALTYLTVVSFIYLIIANVTFAFRHPWATDMEKFIHIGDALMFNKLSYKEMRGEYEER