Scaffold Ga0315899_10041949

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10041949
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4811
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F043890	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_100419491	F002333	N/A	TDGSEQVYAREVIKVAFTDYTQRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDTNKVLHLLQSDQTDLGHLVAPDGLRLPNRPLDFDRDMEADESTPVVAEPWCSCGSYQRQLSNVSDFASEITGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPADHISDGRFVLLYTNSGAQAPLSHWRTYKPKEIFTQHDAWDLFFNMMDAGYVPFPGTALPQLKSAIKKQ
Ga0315899_1004194910	F008128	N/A	MKTIPVPKLTVSFEVDIEVEYNSFGGKTADEIAEALQDEIHNLVFELDQVIGMESHCTSIAPYN
Ga0315899_100419493	F043890	N/A	MQKTYSLAACNPNSINKLQIEWIDELDGTGTLHIDWDDTDPDLQWWTDLGPESQESFIIESLREALDYYVD
Ga0315899_100419494	F002738	GGA	MSIETYGLSSEQYEEFFEDNVAFSAKLYVKACQILRDNGAGAIDFKTTLDLYQEAVYQTNDDCRRYQKANNPEAVKKDDIFGLSPSREELMAEVQSVNVKVEALVDYLSKLVETTTNGLNGIAETLVD
Ga0315899_100419495	F013517	N/A	MFESLFAAVLPVMKDLLWAAAGMLLTYALNKIQSYCS
Ga0315899_100419497	F001018	N/A	MTQITSTKLDELSVIKLYEHYGALERSLPLLTPDSQDLAKAELEACANLRSEKVDRIYYAMASHEDALERIKKESDLIVQAKRHHEGQLKSLKGLLNYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISSDPEFWHSEERANYCIEEEITTTKRVVLRSMSGEVLSERTEPKTTTKVLPNLDAIRDAYQNGKQLPLGVKVTQEYSVRSKRIFGEPRMDMAASEYPGQLLPENSSTD