Scaffold Ga0308415

Basic Information
Taxon OID	3300031776 Open in IMG/M
Scaffold ID	Ga0308415_1001526 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9856
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9856

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004791	Metagenome / Metatranscriptome	423	Y
F037517	Metagenome / Metatranscriptome	167	Y
F081390	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308415_10015263	F037517	GGAGG	MRVRQIGTLVFDADTNIVVDANNQDAPGVGFNVNTLFDPQPFSVEIAFRRPTRLVALNAVSALARELHSYAQRRQDERFAIAGGALVIVEDASGGTVMRSHLRDASVTLLSVETTASGVIARVRVTGVLVAPFLNYEFIQNVLTSLLPYERRVVALSGLSDAYLYKHSLFCSVSNMTGLYNALLAVEELESATGTSRIQAISPTSVSSGIVLQGWNAGWAELTRAQFTSATTGTITYTINPATFPQDVYRLFIEIFCPTTPSSNARYFVDWAGQPQIAETLSGDRSWYTPALFVRSNATFTLTLNLQNVPTGTAVMPLILIPTDGVSVWNVITPPTLQYFHTLDHQSALSRPFETEPTGTIYGAPGVITSRYVAVFNGMMNVPITGSSTLIIRSRRIEPAAFA
Ga0308415_10015265	F081390	N/A	MRCDQRLMPPLCAQRREMPRNALERLTIKRVGRAVVDVPT
Ga0308415_10015266	F004791	AGGAGG	MTTPANVYDVDAIYVDRNALSIREAATLLNRELTPETIARLVRRAIGNQADLFPIRALRRVYERVLPQIFEPDAAIRARVEGLRPNVATITLGEYHQFLDASERRIAFPEVAAVILTKAYGEDILNEPYAAAALLLKKIFDSIGDEGNE
Ga0308415_10015268	F002970	GGAG	MSSSAVADIIELLAGLAVQYNSAVVPVQRLATQPSWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVAQLRFAWRTRGDVQLLNVSGIIDIIRYSERAYEGVAMTTRFAHLIRAPST

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308415_1001526

Overview

Ecosystem & Geography

Associated Families

Sequences