Scaffold Ga0315332_10000169

Overview

Basic Information

• Taxon OID: 3300031773
• Scaffold ID: Ga0315332_10000169
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25174
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (34.15%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006848	Metagenome / Metatranscriptome	363	N
F011489	Metagenome	290	N
F013089	Metagenome	274	N
F020174	Metagenome	225	Y
F023580	Metagenome	209	N
F026567	Metagenome	197	N
F030437	Metagenome / Metatranscriptome	185	N
F067697	Metagenome	125	N
F095418	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315332_1000016917	F095418	GGAG	MASTDKHAFVGDVEVDNARYTKISVYTNQPLGASSRVLLTETGLYTYKAYGQNSATNLNANDASVVGLLEQGTLNVTGAIGYTIPEITIPDNYIYYE
Ga0315332_1000016926	F030437	N/A	MNHSQEENWVTGKLGTRSASAYRTSIWTPVNHDDFYKNRQKYIDAGWQSYCWTKGAAGYDKYFVSKLPKDEFEHLLMVEKKYGYYTLFFHIDED
Ga0315332_1000016927	F020174	N/A	MDEIKEDVLKYWNWAQKEFEGEDIDRLRFEVESAVTNLNRYINNEFRRKAMGKTDMRSK
Ga0315332_1000016929	F013089	N/A	MGQSKIKTIQPNGTYDSQNGLMYKFEIQLESGDSGEVSAKSQDRWSVGDEVEFEVTPSKWGDRMKLTKPGFSPSQSKANNPDIQKRIDASWAIGHAINQENDPEKILEAAEFLLSIRATLISKL
Ga0315332_100001693	F006848	GAG	MMELKLPHRWSDLSLGELQVMMTTENPLEKISICSGQSVEKLRSMPQKLIEAASAHLDNLLTQETARHEKVVEIDGKRFGFIPNWDEFTAGEWIDMENHLEDFWKNAHKITALLYREVTYELGDKYEVKKYTAKEDASIFEEMGADLISGMLLFFWTSRNQLLHDMQFSLLEVADKAIQSVKNGDGITSSTPSPEKTSSRWTRLRNSLFKSYSSTSAI
Ga0315332_1000016931	F023580	AGG	MNNIKLFLIRNYGSTTEAAKTLDVTSNTVRNWCGRMPRNILKHLPEISETCGATFAEVVEEVLICERQGME
Ga0315332_1000016933	F067697	GAG	MKQGYYGNFFERLKIQEFRDCIIKHEEERASILEQQHKTISRGAQDPTNVPEYDPEQAKLEWRMKNNPFLIPGKNDSSKGEGEA
Ga0315332_1000016935	F011489	AGAAG	MNSGSRKGWNSFLTKHYSKLVRIARRWTDSPSDLVHHTYLRCIDKRFPDGDNETALGYFVKAMYNEATRGKFKEIYHVTDADPKEQAFENDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSSIGESTLYRSLHITRKILKDVLRNGSKED
Ga0315332_100001697	F026567	N/A	MKAIKILFLVVLAIVAIPVGIVYSFGESLYFIASDILKSIWRAIYDFFRDVSIIVSVTASKFLNRLLMDSGIPFGNHSVSAVLGANQRENTLTGLGLWLTLLLNSIEENHCRKASERAGI