Scaffold Ga0315288_10226184

Overview

Basic Information

• Taxon OID: 3300031772
• Scaffold ID: Ga0315288_10226184
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2010
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005113	Metagenome / Metatranscriptome	411	Y
F013396	Metagenome	271	N
F074549	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315288_102261841	F074549	GGGGG	MSLTEILFNAASGGVVGSLLHLGTSFFETWRKKKDAEVEIMLLNAKLAAAEKEAAWNAFTASQKDANATLVIPVGTWPWVGSTYVLVEAFRQLTRPGLTWAGFIFLTSVYFSAPIEVRATMSPEIQFG
Ga0315288_102261842	F013396	N/A	VTLRRSLLLAVLALGLVVVLALALRSERVLTAGLPLRIIVASEADAWTLAGPSAVVVLGTGSMAPYIPAAAAGADPLRTVSALVVLVSDASYSDIKAGSLCIYVPRWAGRNVMHQAAQIDAGGWIMTGLGNKAYENKERVTAANFVGIVSRTYVWGK
Ga0315288_102261843	F005113	N/A	MTKEEHKSAIVQQLQQQSLNLLVDSLAAALAEIESLKAAAAADKPTP