NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318509_10056083

Scaffold Ga0318509_10056083


Overview

Basic Information
Taxon OID3300031768 Open in IMG/M
Scaffold IDGa0318509_10056083 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022839Metagenome / Metatranscriptome212Y
F088362Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0318509_100560834F088362N/AVSSSTTFKLLDQQFGETRVPANPADRPRPPNKISQASRRPLGWLKTKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0318509_100560835F022839N/AGALPGPLQGYTVYEAAVLSKGSTDQAATAFVKYLASAPAAAHWEAAKLEPATTYLPTRAN

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