Metagenome / Metatranscriptome Family F088362

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088362
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	100 residues
Representative Sequence	VIVRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Number of Associated Samples	79
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	46.79 %
% of genes near scaffold ends (potentially truncated)	44.95 %
% of genes from short scaffolds (< 2000 bps)	89.91 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.550 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (49.541 % of family members)
Environment Ontology (ENVO)	Unclassified (63.303 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (49.541 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.38% β-sheet: 1.04% Coil/Unstructured: 39.58%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13531	SBP_bac_11	20.18
PF00248	Aldo_ket_red	13.76
PF04134	DCC1-like	3.67
PF00486	Trans_reg_C	2.75
PF02738	MoCoBD_1	2.75
PF03401	TctC	1.83
PF03092	BT1	0.92
PF04392	ABC_sub_bind	0.92
PF03928	HbpS-like	0.92
PF01650	Peptidase_C13	0.92
PF00144	Beta-lactamase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	3.67
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.83
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.92
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.92
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.92
COG5206	Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8	Posttranslational modification, protein turnover, chaperones [O]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.55 %
Unclassified	root	N/A	39.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.55 %
Unclassified	root	N/A	39.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.55 %
Unclassified	root	N/A	39.45 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.80 %
Unclassified	root	N/A	39.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	53.21 %
Unclassified	root	N/A	39.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	38.53 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	33.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	31.19 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	4.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.92 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.45 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	4.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %
Bradyrhizobium sp. SRL28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	0.92 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10002161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5188	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10095442	Not Available	629	Open in IMG/M
3300004267\|Ga0066396_10031542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	774	Open in IMG/M
3300004629\|Ga0008092_11333894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300004629\|Ga0008092_11349399	All Organisms → cellular organisms → Bacteria → Proteobacteria	1333	Open in IMG/M
3300004633\|Ga0066395_10045289	Not Available	1920	Open in IMG/M
3300004633\|Ga0066395_10087937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1470	Open in IMG/M
3300004633\|Ga0066395_10229307	All Organisms → cellular organisms → Bacteria → Proteobacteria	986	Open in IMG/M
3300004633\|Ga0066395_10378530	Not Available	793	Open in IMG/M
3300005332\|Ga0066388_105801236	All Organisms → cellular organisms → Bacteria → Terrabacteria group	624	Open in IMG/M
3300005332\|Ga0066388_107786942	Not Available	536	Open in IMG/M
3300005363\|Ga0008090_10145204	Not Available	881	Open in IMG/M
3300005713\|Ga0066905_100400372	Not Available	1113	Open in IMG/M
3300005764\|Ga0066903_100690308	Not Available	1796	Open in IMG/M
3300005764\|Ga0066903_106472822	Not Available	610	Open in IMG/M
3300005764\|Ga0066903_107274944	Not Available	572	Open in IMG/M
3300006938\|Ga0081245_1487116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	706	Open in IMG/M
3300006939\|Ga0081244_1444288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	578	Open in IMG/M
3300009792\|Ga0126374_10098443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1652	Open in IMG/M
3300010046\|Ga0126384_11772453	Not Available	585	Open in IMG/M
3300010046\|Ga0126384_12346357	Not Available	516	Open in IMG/M
3300010048\|Ga0126373_10478581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1284	Open in IMG/M
3300010358\|Ga0126370_10184597	Not Available	1559	Open in IMG/M
3300010358\|Ga0126370_10466338	Not Available	1057	Open in IMG/M
3300010359\|Ga0126376_11075089	Not Available	811	Open in IMG/M
3300010361\|Ga0126378_10604924	Not Available	1210	Open in IMG/M
3300010361\|Ga0126378_10969232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	955	Open in IMG/M
3300010361\|Ga0126378_12425710	Not Available	599	Open in IMG/M
3300010366\|Ga0126379_11609076	Not Available	755	Open in IMG/M
3300010366\|Ga0126379_13701944	Not Available	512	Open in IMG/M
3300010376\|Ga0126381_104465109	Not Available	540	Open in IMG/M
3300010398\|Ga0126383_11761504	Not Available	708	Open in IMG/M
3300010863\|Ga0124850_1010917	Not Available	2888	Open in IMG/M
3300010868\|Ga0124844_1014766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2083	Open in IMG/M
3300012198\|Ga0137364_11196932	Not Available	569	Open in IMG/M
3300012948\|Ga0126375_10415152	Not Available	977	Open in IMG/M
3300012971\|Ga0126369_12140768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	647	Open in IMG/M
3300016294\|Ga0182041_11923020	Not Available	550	Open in IMG/M
3300016319\|Ga0182033_11855074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	548	Open in IMG/M
3300016371\|Ga0182034_11931452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	521	Open in IMG/M
3300016387\|Ga0182040_11054356	Not Available	680	Open in IMG/M
3300016387\|Ga0182040_11912549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	509	Open in IMG/M
3300016404\|Ga0182037_10345686	All Organisms → cellular organisms → Bacteria → Proteobacteria	1210	Open in IMG/M
3300021444\|Ga0213878_10208366	Not Available	824	Open in IMG/M
3300021560\|Ga0126371_10485742	Not Available	1383	Open in IMG/M
3300027654\|Ga0209799_1121676	Not Available	594	Open in IMG/M
3300031543\|Ga0318516_10122363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1484	Open in IMG/M
3300031543\|Ga0318516_10202127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1147	Open in IMG/M
3300031543\|Ga0318516_10522617	Not Available	680	Open in IMG/M
3300031544\|Ga0318534_10108948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1588	Open in IMG/M
3300031545\|Ga0318541_10004815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5602	Open in IMG/M
3300031545\|Ga0318541_10053375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2081	Open in IMG/M
3300031545\|Ga0318541_10099022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1563	Open in IMG/M
3300031564\|Ga0318573_10785393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	512	Open in IMG/M
3300031572\|Ga0318515_10103963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1491	Open in IMG/M
3300031572\|Ga0318515_10679438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	545	Open in IMG/M
3300031573\|Ga0310915_10219341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1333	Open in IMG/M
3300031573\|Ga0310915_10538140	Not Available	829	Open in IMG/M
3300031640\|Ga0318555_10352221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	797	Open in IMG/M
3300031668\|Ga0318542_10139055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1199	Open in IMG/M
3300031679\|Ga0318561_10486395	All Organisms → cellular organisms → Bacteria → Terrabacteria group	679	Open in IMG/M
3300031680\|Ga0318574_10598281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	646	Open in IMG/M
3300031680\|Ga0318574_10656961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	614	Open in IMG/M
3300031682\|Ga0318560_10204918	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300031719\|Ga0306917_10036938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3193	Open in IMG/M
3300031719\|Ga0306917_10866080	Not Available	707	Open in IMG/M
3300031719\|Ga0306917_11184230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	593	Open in IMG/M
3300031723\|Ga0318493_10246110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	954	Open in IMG/M
3300031724\|Ga0318500_10342332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	737	Open in IMG/M
3300031724\|Ga0318500_10632001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	543	Open in IMG/M
3300031736\|Ga0318501_10120824	Not Available	1326	Open in IMG/M
3300031748\|Ga0318492_10116369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1326	Open in IMG/M
3300031763\|Ga0318537_10274463	Not Available	624	Open in IMG/M
3300031763\|Ga0318537_10351586	Not Available	544	Open in IMG/M
3300031768\|Ga0318509_10056083	All Organisms → cellular organisms → Bacteria	2024	Open in IMG/M
3300031769\|Ga0318526_10480515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	507	Open in IMG/M
3300031770\|Ga0318521_10150452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1321	Open in IMG/M
3300031793\|Ga0318548_10071502	Not Available	1623	Open in IMG/M
3300031805\|Ga0318497_10302855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	890	Open in IMG/M
3300031821\|Ga0318567_10790817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	537	Open in IMG/M
3300031831\|Ga0318564_10156789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1015	Open in IMG/M
3300031833\|Ga0310917_10411526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	919	Open in IMG/M
3300031835\|Ga0318517_10048451	Not Available	1772	Open in IMG/M
3300031860\|Ga0318495_10147361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1061	Open in IMG/M
3300031879\|Ga0306919_10860611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
3300031880\|Ga0318544_10037766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1705	Open in IMG/M
3300031910\|Ga0306923_11530544	Not Available	696	Open in IMG/M
3300031910\|Ga0306923_11941452	Not Available	599	Open in IMG/M
3300031910\|Ga0306923_12228931	Not Available	548	Open in IMG/M
3300031941\|Ga0310912_10317751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1206	Open in IMG/M
3300031942\|Ga0310916_10226507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1570	Open in IMG/M
3300031942\|Ga0310916_10371608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1215	Open in IMG/M
3300031942\|Ga0310916_11232928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	617	Open in IMG/M
3300031945\|Ga0310913_10063396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2437	Open in IMG/M
3300031945\|Ga0310913_10176528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1486	Open in IMG/M
3300031946\|Ga0310910_11338119	Not Available	552	Open in IMG/M
3300031947\|Ga0310909_10049474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3222	Open in IMG/M
3300031954\|Ga0306926_11311331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	844	Open in IMG/M
3300031981\|Ga0318531_10023470	All Organisms → cellular organisms → Bacteria → Proteobacteria	2483	Open in IMG/M
3300031981\|Ga0318531_10163130	Not Available	1000	Open in IMG/M
3300032001\|Ga0306922_10522042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1264	Open in IMG/M
3300032035\|Ga0310911_10072327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1842	Open in IMG/M
3300032044\|Ga0318558_10008950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3705	Open in IMG/M
3300032051\|Ga0318532_10143204	Not Available	848	Open in IMG/M
3300032055\|Ga0318575_10093383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1450	Open in IMG/M
3300032063\|Ga0318504_10322826	Not Available	732	Open in IMG/M
3300032065\|Ga0318513_10436127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	640	Open in IMG/M
3300032091\|Ga0318577_10107153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1311	Open in IMG/M
3300033289\|Ga0310914_10270554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1529	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.16%
Loam	Environmental → Terrestrial → Soil → Loam	12.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	65.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.84%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	4.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	49.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.84%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.92%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006938	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A001 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300006939	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A10 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100021616	3300000597	Forest Soil	VIVRDAYKISQVSRRPLGWXKMKNLDALAVEKKTASELAEIVAPRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
AF_2010_repII_A001DRAFT_100954421	3300000793	Forest Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKAASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCT
Ga0066396_100315422	3300004267	Tropical Forest Soil	SQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0008092_113338942	3300004629	Tropical Rainforest Soil	DAYKISQASRRPLDWLKMKNLDALVVEKKTASELAEMVATRIGINAAAIKVMPDPVYGWRAMVIGPRTTVSKYQPQADRIRDELCTRYELER*
Ga0008092_113493992	3300004629	Tropical Rainforest Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0066395_100452891	3300004633	Tropical Forest Soil	VIVRDAYKISQVSRRPLGWPKMKNLDALAVEKKTASELAEIVAPRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPKADRIRDELCTRYELER*
Ga0066395_100879372	3300004633	Tropical Forest Soil	LAKREPPLILVIVRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0066395_102293071	3300004633	Tropical Forest Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKAASELAEIVATRIGISAAALQVMPDPVYGWRATVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0066395_103785301	3300004633	Tropical Forest Soil	MQPFSVIRGDRPRRYKISQASRRPLDRLKTKNLDALAVEKKTASELAEMVATRLGISAAAIKVMPDPVHGWRAMVIGPRTTVSKYQPQADRIRDELCTQYELER*
Ga0066388_1058012362	3300005332	Tropical Forest Soil	VIVRDAYKISRASRRSLDWLKMKNLDALAVEKKTASELAEIVATRIGISVAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELC
Ga0066388_1077869421	3300005332	Tropical Forest Soil	LAKREPPLILVIVRDAYKISQASRRPPGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINAMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYEL
Ga0008090_101452041	3300005363	Tropical Rainforest Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKAASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0066905_1004003721	3300005713	Tropical Forest Soil	VIVRDAYKISQVSRRPLGWPKMKNLDALAVEKKTASELAEIVAPRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0066903_1006903082	3300005764	Tropical Forest Soil	MRAPGNPVIVRDAYKISQVSRRPLDWLTMKNLDALAVEKKTASELAEVVATRIGISAAAIKVIPYMDGAMVVGPRTTVSKY*
Ga0066903_1064728221	3300005764	Tropical Forest Soil	VIVRNAYKISQVSRRPLGWLKMKNLDALAVVKKTASELAEIAATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0066903_1072749442	3300005764	Tropical Forest Soil	INSLAKREPPLILVIVRDAYKISQASRRPLGWLKTKNLDALAVEKKTASKLAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRGTVSKYQPQADRIRDELCTQYELER*
Ga0081245_14871162	3300006938	Tropical Rainforest Soil	VSSSTTFKLLDQQFCKTRALIRVIVRDAYKISQVSRRPLGWPKMKNLDALAVEKKTASELAEIVAPRIGISAAAIKVMPDPVYGWRAMVIGSRATVSKYQPQADRIRDELCTRYELER*
Ga0081244_14442881	3300006939	Tropical Rainforest Soil	TREPPLILVIVRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0126374_100984432	3300009792	Tropical Forest Soil	VSSSTTFKLLDQQFGESSPPLILVIVRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0126384_117724531	3300010046	Tropical Forest Soil	VVIVREAYKISQASRRPLDWLKMKNLDALAVEKKTASELAEMVATRLGISAAAIKVMPDPVHGWRAMVIGPRTTVSKYQPQADRIRDELCTQYELER*
Ga0126384_123463572	3300010046	Tropical Forest Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIR
Ga0126373_104785812	3300010048	Tropical Forest Soil	VIARDAYKISQASRRPLDWLTMKNQDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER*
Ga0126370_101845971	3300010358	Tropical Forest Soil	VIVRDAYKISQVSRRPLGWPKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRD
Ga0126370_104663381	3300010358	Tropical Forest Soil	LAKREPPLILVIVRDAYKISQASRRPLGWLKIKNLDALAVEKKTASELAEIVATRIGLSAAAIKVMPDPVYGWRAMVFGPRATVSKYQPQADRLRDKLCTQY
Ga0126376_110750891	3300010359	Tropical Forest Soil	VIVRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER*
Ga0126378_106049242	3300010361	Tropical Forest Soil	VVIVRDAYKISQASRRPLDWLKMKNLDALAVEKKTASELAEMVATRLGISAAAIKVMPDPVHGWRAIVIGPRTIVSKYQPQADRIRDELCTQYEL*
Ga0126378_109692321	3300010361	Tropical Forest Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKAASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADSIRDELCARYELER*
Ga0126378_124257101	3300010361	Tropical Forest Soil	VIVRDAYKISQASRRPLGWLKIKNLDALAVEKKTASELAEIVATRIGLSAAAIKVMPDPVYGWRAMVFGPRATVSKYQPQADRLRDKLCTQYELER*
Ga0126379_116090762	3300010366	Tropical Forest Soil	VVIVRDAYKISQASRRPLDWLKMKNLDALAVEKKTASELAEMVATRLGISAAAIKVMPDPVHGWRAMVIGPRTTVSKYQPQADRIRDELCTQYELER*
Ga0126379_137019442	3300010366	Tropical Forest Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKAASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIR
Ga0126381_1044651091	3300010376	Tropical Forest Soil	AVSSSTTSKLLDQQFCKPRALILVIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0126383_117615041	3300010398	Tropical Forest Soil	LAKREPPLILLISATAYKISQASRRPLGWLKTKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER*
Ga0124850_10109172	3300010863	Tropical Forest Soil	LVIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKAASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0124844_10147662	3300010868	Tropical Forest Soil	LIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER*
Ga0137364_111969321	3300012198	Vadose Zone Soil	IVRDAYKISQASRRPLGWLKTKNLDALAVEKKTASGLAEIVATRIGISAAAIKVMPDPVYGWRVMVIGPRATVSKYQPKADRIRDELCTRYELER*
Ga0126375_104151521	3300012948	Tropical Forest Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKAASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCARYELER*
Ga0126369_121407682	3300012971	Tropical Forest Soil	VIVGDASKSSRVSRRPLGWLKRKNLDALAVEKKTASELAEIVATRIGISAAAINVMPDPVYGWRAMVIGPRATVSKYQPRTDRIRDELCTRYELKR*
Ga0182041_119230201	3300016294	Soil	LSFSINRFGKREPPLILVIVRDAYKILLAWRRPFDWLKMKNLDALTVEKKTASELAEMLATRIGISAAAIKVMPDPVYGWRAMVIGPRTTVSKYQPQADRIR
Ga0182033_118550742	3300016319	Soil	TSKLLDQQFCKTRALILVIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0182034_119314522	3300016371	Soil	LLDQQFCKTRALILVIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0182040_110543561	3300016387	Soil	VIVRDAYKISQASRRPLGWLKTKNLDAPAAEKKTASELAEIVATRIGISTAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDEL
Ga0182040_119125491	3300016387	Soil	SSSPLRPTRGPVRASEFQHDEPPLILVIVRDAYKILQASRHPPGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0182037_103456862	3300016404	Soil	LIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVMPDPVRDGHWPTRHSEQIPTEADRIRDELCTRYELER
Ga0213878_102083661	3300021444	Bulk Soil	VIVRDAYKISQVSRRPLGWPKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0126371_104857421	3300021560	Tropical Forest Soil	VIVRDAYKISQVSRRPLGWPKMKNLDALAVEKKTASELAEIVAPRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPKADRIRDELCTRYELER
Ga0209799_11216761	3300027654	Tropical Forest Soil	LAKREPPLILVIVRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRATVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0318516_101223633	3300031543	Soil	LAKREPPLILVIVRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0318516_102021272	3300031543	Soil	CESVSSSTTSKLLDQQFCKTRALILVIVRDAYKILQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIDISAAAINVVPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELE
Ga0318516_105226171	3300031543	Soil	LSFSINRFGKREPPLILVIVRDAYKILLAWRRPFDWLKMKNLDALTVEKKTASELAEMLATRIGISAAAIKVMPDPVYGWRAMVIGPRTTVSKYQPQADRIRDELCTWHELER
Ga0318534_101089481	3300031544	Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0318541_100048155	3300031545	Soil	LIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0318541_100533753	3300031545	Soil	VIRGDVRDAYKISQASRRPLDWLKMKNLDALAVEKKTASELAEMVATRLGISAAAIKVMPDPVHGWRAMVIGPRTTVSKYQPQADRTRDELCTQYEL
Ga0318541_100990223	3300031545	Soil	LAKREPPLILVIVRDAYKIPQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0318573_107853931	3300031564	Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0318515_101039631	3300031572	Soil	VSSSTTSKLLDQQFCKTRALILVIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0318515_106794381	3300031572	Soil	VIIRDAYKISQASRRPLDWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0310915_102193411	3300031573	Soil	VVRSPEFLRADAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0310915_105381402	3300031573	Soil	VVIVRDAYKISQASRRPLDWLKLKNLDALAVEKKTASELAEMVATRLGISAAAIKVMPDLVHGWRAMVIGPRTTVSKYQPQADRIRDELCTQYELER
Ga0318555_103522211	3300031640	Soil	LLIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0318542_101390553	3300031668	Soil	IRGDVRDAYKISQASRRPLDWLKMKNLDALAVEKKTASELAEMVATRLGISAAAIKVMPDPVHGWRAMVIGPRTTVSKYQPQADRTRDELCTQYEL
Ga0318561_104863951	3300031679	Soil	VIVRDAYKILQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIDISAAAINVVPDPVYGWRAMVIGPRATVSKYQPQADRIRDELC
Ga0318574_105982811	3300031680	Soil	LVIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0318574_106569611	3300031680	Soil	YKLLDQQFCKTRALILLIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0318560_102049181	3300031682	Soil	VIVRDAYKISQASRRPLGWLKTKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0306917_100369383	3300031719	Soil	VIRGDVRDAYKISQASRRPLDWLKMKNLDALAVEKKTASELAEMVATRLGISAAAIKVMPDLVHGWRAMVIGPRTTVSKYQPQADRIRDELCTQYELER
Ga0306917_108660802	3300031719	Soil	VIVRDAYKISQASRRPLGWLKTKNLDAPAAEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0306917_111842301	3300031719	Soil	TSKLLDQQFCKTRALILLIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0318493_102461102	3300031723	Soil	FSVIRGDVRDAYKISQASRRPLDWLKMKNLDALAVEKKTASELAEMVATRLGISAAAIKVMPDPVHGWRAMVIGPRTTVSKYQPQADRTRDELCTQYEL
Ga0318500_103423321	3300031724	Soil	SQASRRPLDWLTMKNQDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0318500_106320011	3300031724	Soil	LIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0318501_101208242	3300031736	Soil	VIVRDAYKISQVSRRPLGWPKMKNLDALAVEKKTASELAEIVAPRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYE
Ga0318492_101163692	3300031748	Soil	VIARDAYKISQASRRPLDWLTMKNQDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0318537_102744631	3300031763	Soil	LAKREPPLILVIVRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0318537_103515862	3300031763	Soil	LAKREPPLILVIVRDAYKIPQASRRPLGWLKMKNLDALAVEKKTASELAEIVAMRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRI
Ga0318509_100560834	3300031768	Soil	VSSSTTFKLLDQQFGETRVPANPADRPRPPNKISQASRRPLGWLKTKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0318526_104805151	3300031769	Soil	ILVIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0318521_101504523	3300031770	Soil	VRASEFQHDEPPLILVIVRDAYKILQASRHPPGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0318548_100715024	3300031793	Soil	VIVRDAYKISQVSRRPLGWPKMKNLDALAVEKKTASELAEIVAPRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPKADRIRDELCTRYELE
Ga0318497_103028552	3300031805	Soil	VSSSTTSKLLDQQFCKTRALILLIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0318567_107908172	3300031821	Soil	VRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0318564_101567892	3300031831	Soil	VSSSTTSKLLDQQFCKTRALILLIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0310917_104115261	3300031833	Soil	LAKREPPLILVIVRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQANRIRDELCTQYELE
Ga0318517_100484511	3300031835	Soil	VIVRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVAMRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0318495_101473612	3300031860	Soil	LAKREPPLILVIVRDAYKIPQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0306919_108606112	3300031879	Soil	SGTRYKLLDQQFCKTRALILVIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0318544_100377663	3300031880	Soil	VVIVRDAYKISQASRRPLDWLKLKNLDALAVEKKTASELAEMVATRLGISAAAIKVMPDPVHGWRAMVIGPRTTVSKYQPQADRTRDELCTQYEL
Ga0306923_115305441	3300031910	Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKAASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRD
Ga0306923_119414521	3300031910	Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVMPDPVRNGHWPTRHSEQIPTEADRIRDELCTR
Ga0306923_122289311	3300031910	Soil	VIVRDAYKILQVSRRPLGWPKMKNLDALAVEKKTASELAEIVAPRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPKADRIRDELCTRYELER
Ga0310912_103177512	3300031941	Soil	LAKREPPLILVIVRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRMGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0310916_102265073	3300031942	Soil	VIVRDAYKIPQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0310916_103716083	3300031942	Soil	ILVIVRGAYKISQVSRRPLGWPKMKNLDALAVEKKTASELAEIVAPRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPKADRIRDELCTRYELER
Ga0310916_112329281	3300031942	Soil	TTSKLLDQQFCKTRALILVIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0310913_100633963	3300031945	Soil	LAKREPPLILVIVRDAYKIPQASRRPLGWLKTKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0310913_101765282	3300031945	Soil	VIVRDAYKILLAWRRPFDWLKMKNLDALTVEKKTASELAEMLATRIGISAAAIKVMPDPVYGWRAMVIGPRTTVSKYQPQADRIRDELCTWHELER
Ga0310910_113381191	3300031946	Soil	VIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELERS
Ga0310909_100494744	3300031947	Soil	LAKREPPLILVIVRDAYKIPQASRRPLDWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0306926_113113312	3300031954	Soil	VIVRDAYKILQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIDISAAAINVVPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0318531_100234701	3300031981	Soil	VIVRDAYKISQVSRRPLGWPKMKNLDALAVEKKTASELAEIVAPRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQP
Ga0318531_101631302	3300031981	Soil	LAKREPPLILVIVRDAYKISQASRRPLGWLKTKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0306922_105220422	3300032001	Soil	QQFCKTRALILVIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0310911_100723274	3300032035	Soil	VIVRDAYKIPQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0318558_100089501	3300032044	Soil	SATSKLLDQQFCKTRALILVIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAALQVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTRYELER
Ga0318532_101432042	3300032051	Soil	VIVRDAYKISQASRRPLGWLKTKNLDAPAAEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0318575_100933833	3300032055	Soil	VRDAYKISQASRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0318504_103228261	3300032063	Soil	LIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRI
Ga0318513_104361271	3300032065	Soil	AYKISQASRRPLDWLTMKNQDALAVEKKTASELAEIVATRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPQADRIRDELCTQYELER
Ga0318577_101071531	3300032091	Soil	VTISGTRYKLLDQQFCKTRALILLIVRDAYKISQVSRRPLGWLKMKNLDALAVEKKTASELAEIVATRIGISAAAINVVPDPVYGWRAMVIGPRVTVSKYQPQADRIRDELCTRYELER
Ga0310914_102705541	3300033289	Soil	LILVIVRDAYKISQVSRRPLGWPKMKNLDALAVEKKTASELAEIVAPRIGISAAAIKVMPDPVYGWRAMVIGPRATVSKYQPKADRIRDELCTRYELER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088362

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences