Scaffold Ga0308401_1000117

Overview

Basic Information

• Taxon OID: 3300031767
• Scaffold ID: Ga0308401_1000117
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23704
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (93.55%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005028	Metagenome / Metatranscriptome	414	Y
F005302	Metagenome / Metatranscriptome	405	Y
F012577	Metagenome / Metatranscriptome	279	Y
F014738	Metagenome / Metatranscriptome	260	Y
F018115	Metagenome / Metatranscriptome	236	Y
F032180	Metagenome / Metatranscriptome	180	Y
F067304	Metagenome / Metatranscriptome	125	Y
F105262	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308401_100011710	F004791	AGGAGG	MDKPAEIYDTEALRVDRSALTIREAASVLNNELTAPVVARLVRKAIGTQADRLPLKALKRVYERVLPQIFEPDEAVRSRVAGLTPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDSVAEEGNE
Ga0308401_100011711	F067304	N/A	MRRDQRLMPPLRAQRRKMLRDAPERLTVKRVGRAVVDVSAQHQFCVRGGQRREVEQT
Ga0308401_100011714	F012577	GAGG	MLVAITRPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEAKDGNITWHALGFGALQRDARISVVQNMFDMTRWQPVGTGFMTGSGYDSRGDLWEYEVVATGGTPRVQIRTKKTFTITNTTLFFLVYLYDQPERYGKISTSENISIFSAVSTGLADGVWVAPVTAIPQPNAYTLTLGTFTGISVNGNVPSSNCVGWVVGIRAAGNEIVAGTTSVTFHAMINNPAFGGINSSLLSSALIERGGCCDVFLPEFAGIMIEKTDANLREIVEQNNDDFVQVRYYHKRFLRDRPRPTIDFRADSTLVWRFPEATRVVDISKAPNRVYGQYRGYWTDHLTATTSVASLESRRQLARRLASVGEYGSKAIAEARRNEAAVALDRQIAPLTVELDNSRYELMTREGVTVPNWAADVSDYVIVPGYFRNAKITSRVITRERTTYTVSFNPDDFVTVLR
Ga0308401_100011718	F014738	GGAGG	MKLDILLPVSAFALAFVHPDAAQVAATAVLVLLVTRIERGRRARKKRSAPVAP
Ga0308401_100011726	F004307	AGGAG	MFKELIHNGSRSERPELNGAYIGRFLGVKERQRPTFETRLSPEPTYEEVFVFEFEVVDPELDAPLRVSRWVRKPPRLDHPAKNGKVSNLYKTLAALYGVSVMSDEQLQNAEEFVQNAVGREYQLTLETKPSGWVEIVHIAPVRKTRSRKKEEDEEVPF
Ga0308401_100011728	F018115	AGGAG	MNDAEERFVRRYAHLPPDAPLDRHAARALLRRALADREALAEYLLNNECAPSLLGEFINRHWNDALSNTARGASLRLASRTLRALDCLEERDRWAVLEWMQRGVVPSTRILCRLCEEIDD
Ga0308401_100011729	F005028	AGGAG	MRDNDLRNDDLRAAMSFFAERLRGVDGDETRLLRRTRHKLRNETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDATAEAHLGLCWRLDEDVLTVYTDLHAAAKRLRQPHRDLAAVCLKWGYVHETVVQMLAKALERKPRNVVED
Ga0308401_100011730	F032180	AGGA	MWWKIEEIPEQELENWANAVGRFERAAKRDVAVRVAGAFVIYDLNGVLGYVAGREAPDGAYLVERWVRGKKGWTLYE
Ga0308401_10001176	F105262	AGGAGG	MLVQETIQPLLRYFNAAASGTDTSVISIANAQAVRIVAHTGTVTGSASLQVHVNDTNNTNNSAQLTDKTIASLASNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAPIAIEISAFPARDVPATLPTDWTRVL
Ga0308401_10001178	F002970	GGAG	MSSSAVTDIIELLAGLAVQYNSAVVPVQRLASQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVAHLRFAWLTRGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLVRAPSS
Ga0308401_10001179	F005302	AGGAGG	MSHSGVIAGLYAGNYAVEISTDATTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTIGKQEPVELTLTFLYSEASGSAANTIVDRFRSATPTLGVRWSPRGLVDSARAYATSNDGGTSFGLGVITGVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSNPTNLNPAS