NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1000086

Scaffold Ga0308401_1000086


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1000086 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28161
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (89.47%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F002982Metagenome / Metatranscriptome515Y
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F006252Metagenome / Metatranscriptome377Y
F007404Metagenome / Metatranscriptome351Y
F010840Metagenome / Metatranscriptome298Y
F012577Metagenome / Metatranscriptome279Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F016404Metagenome / Metatranscriptome247N
F051735Metagenome / Metatranscriptome143N
F075805Metagenome / Metatranscriptome118Y
F081391Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0308401_100008610F051735AGGAGMFRDIVLINGPVPKDGVADYERLRIKARPLGRPYTWDNGRAWNPHTTNGGFILVFECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYERYDSLAEARAGGRGWLIEYALGNE
Ga0308401_100008611F010840AGGAGGVNLPFSQPLDKVTFGALAAATVIILTWALREFAGIDLPAEVQSALAVIIGYVVSYHIPLSEVEAEAIARKYYRNYK
Ga0308401_100008612F016404GGAMTTEDLLTDEARAAVLRALFMIVVNDNEPASARVAAARLFLSQFDEQPNADQSVMVIVDEAAFVKTV
Ga0308401_100008620F002970GGAGMSYSTVVDVIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWLTRGDVQLLNVSGIVDVIKYGERAYEGVAMTTRFAHLIRAPSV
Ga0308401_100008621F005302AGGAGGMSHSGVIAGLYAGNYAVEISTNGTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPIEITLTFLYNEDTNSAANTIFGQFQSASPRLGVRWSPRGLVGSARAYGTSNDGGTSFGVGVITNVTLSALDPSDADPYVAMVTVRTPSLRQYTLGSSPTNLNPAS
Ga0308401_100008622F004791AGGAGGMTKPAEIYDIDTIRVDRNALTIRDAASVLNNELTAPVVARLVRKAIGTQADRFPLRALKAVYERVLPQIFEPDEAVRSRVAGLTPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDSVAEEGNE
Ga0308401_100008626F012577GAGGMLVAITRPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPTFARIGVMTQIGDELIVYCTQLSKTIWRGQIERIEETKDGSITWHALGFGALQRDARISVVQNMTDMRRWQPVGTGFMSSSGYESRGDLWEYEVVTIGGSLFTRIRTKRTFSISNTTLFFLAYLYNQPERYVTITANERINVLITTLSGLATGVWVAPVTNIPSPNAYTLTLGTFTGIGSSGVVTVGNCFGWVIGVRANTGSETTAGATSVAFRATINDADGVGINGALLAIALTGRGGCCDVYLPPQTNVTLEKPDANLREIVEQSAVASLRYHRKRFLRDRPLPVIDFRTDSTLVWRFPEKTRVTDISKAPNRVYGQYRGYWTDHLTSTTSILSLELRRQQLAWRVGSVGEYGSKAAAEDRRNEAAVALDRQIAPTTVELDNSRYELMTREGVTVPNWAADVSDYAIVPGYFRNAKITARVITRERTTYTVSFNPDDFVTALR
Ga0308401_100008629F007404AGGAGMDIIEIFRLLAAGHNGLTALDYAWNALFGAIGAATAYLADTNGEVFLPRYDAEQHSVELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPALIDKIAWFVERRRK
Ga0308401_100008630F014738GGAGGMKLDILLLVSAFALAFVHPDAAQVAASAVLLLLMVRIERGRRARKKKSAPVVHRGA
Ga0308401_100008632F016100AGGAGGMVTSVKVERFKEYSELVRVVSRSEKTPATNKDIIRPLNYELFIGSHLPEPDWHRLGALVVALFRSFAVVDVEIWQADNGVWVADALVDFGGVRRLRKGEGETPLHAVIELVYDIQRY
Ga0308401_100008634F006252AGGGGGVRSFDEQAAFGLPYERLIAQTAALLLYPQRLDLTLVRLDAYAPLDFLIVDDERPIAALEVKRRSVRSDAYPTTIIPQSVVDAARRLTIPVYAAILFTDGLAVFDVLRTPSSVRWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
Ga0308401_100008638F081391GGAMKKSRSEPRWKRKEREALKALQALFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGDNPGFAVEVKA
Ga0308401_10000864F075805AGGAGGMRVRVWHGWRGVHGNRDVSQFVWIELDGELLGSLVVEVDEDRTDERVFYQTTDGRIVVAEHRYGDWEKGGVDYGVVSVYADLEDAARRGWYEDLVRVGAYDAPTLELDEWLSRYEEEE
Ga0308401_10000865F002982GAGGMKIAFERTPTAICAVLYEPGECDRIISVSRASDAIDVFALDVSPAAYKPLDALFALSRVVCVEIERREGGWRVEVAYWNKGLGTLAQYETDAATLSEALARCVWALAR
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