Scaffold Ga0326513_10208673

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326513_10208673

Scaffold Ga0326513_10208673

Overview

Basic Information
Taxon OID	3300031760 Open in IMG/M
Scaffold ID	Ga0326513_10208673 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1694
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.5357	Long. (^o)	-121.7593	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102209	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326513_102086733	F102209	N/A	MKIPKIKDDESLAMWRERLAQEFNLDPKMQELLREVSITSYIHGTDDIMDSLKKEGKL

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