Scaffold Ga0316219

Basic Information
Taxon OID	3300031759 Open in IMG/M
Scaffold ID	Ga0316219_1000759 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031759 Open in IMG/M

Scaffold ID

Ga0316219_1000759 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40159
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (67.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

40159

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (67.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.0411

Long. (^o)

-89.6861

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026474	Metagenome / Metatranscriptome	197	Y
F033683	Metagenome	176	Y
F045505	Metagenome	152	Y
F067354	Metagenome / Metatranscriptome	125	Y
F096502	Metagenome / Metatranscriptome	104	Y
F102402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100075917	F033683	N/A	MNYENIELEAKTAAADTRWFNGTSESILIRLDRLQDILDRTRVAASNPNTTDRELERYAGVLAELGAEKEQLEKLASEYVDFDAEDYLNSLPGGTIAKEYRVSSAGTSDLGADDGSLLYRTAASIENEFEDADWINFVTAGAEVWIEDQNNRLLKSQSNTREAAVFYVEKKTLPILDSAKRASIIDNFVDNVEICRRAKNDGNEFRSIKSAGKNKLAASFVQDAIDDSFGNDLNWL
Ga0316219_100075919	F102402	GAG	MDSTSEYIGKVVALLTAILSEQENLAYEMVLESNPIELFSALAGVLLSALGKLATINDKKLEDYLKDLGMLAIRSE
Ga0316219_100075925	F045505	N/A	MKKVTIVISYDAMNAQSDELASQEISETIAGLMNSLRTQVNGVQVSVKFQNNNKEK
Ga0316219_100075944	F096502	AGGAG	MEPRLNIKVASLFDKKADASPDNNFQDPSQQWIGDFIDEDSNHFDKNMQAYEEQRQGLGDQIQRYVDESHMHATDANPASDPVLMSQNPALVNSRDLQDVPTKAASKIASQSKGFRNSQARPDFTMGVVANTNKGTIVESRVVAETPTTKIAGTVIAVGDREFAVVWDDRTASVERKSDFELVIAE
Ga0316219_100075949	F067354	AGGAG	MSTLFNNEAPRILPKSAFNKKSFLEIVSPLIKLDIIKEGEGLKCRNSHKLDLTNSIYEKIDEE
Ga0316219_10007596	F026474	N/A	MIARDILNTILTDAIANGHHKLAGNMDGLSDVVNIVLAAFSGVNLIHLGWMGWLGILPIGIVGKITTEKATKWSHKNIKAETE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0316219_1000759

Overview

Ecosystem & Geography

Associated Families

Sequences