Scaffold Ga0315907_10119729

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10119729
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2247
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005845	Metagenome / Metatranscriptome	388	Y
F009318	Metagenome / Metatranscriptome	319	Y
F046907	Metagenome	150	Y
F087100	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_101197294	F046907	N/A	MPEFDEPVLITDIEGLQIVAWRNMHTDKWHSENHSWFTSEVNYWMPIPEIV
Ga0315907_101197295	F005845	N/A	MKPTPTDFRRWQLHIRKECVNCDRPDRSETIKAWSVNWTLLGRILQAKNA
Ga0315907_101197296	F009318	N/A	MRRILLLFLLTACTNNRPWKVIEVRPKGNACEYVLSRSNGFGPQVKNITDKCGKYQLFQTINP
Ga0315907_101197298	F087100	N/A	QEQGEMVDLHLMTKAQGMQLATTSSMYQKAQLAKAKVISPYWVLHNQCKSKAEALEFIRYMGWKPGWAFHNKDRFPILK