Scaffold Ga0315907_10089376

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10089376
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2649
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F023346	Metagenome / Metatranscriptome	210	Y
F031030	Metagenome / Metatranscriptome	183	N
F045085	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100893763	F023346	N/A	MNNMNNINKNIIITYAKALRTIQKEQIDPYIELIEKELIKLFPELEHREDNALNWAYDILNAESNAEVVETLNRVEKIITEERKETWNCNYCGKNTYNDDVEYLFGTNHIGCVLEDDIKNREHSDPDYILDARLRKICDLETELRETKRAIVNMELKLEHMRSDYHHEPTN
Ga0315907_100893764	F045085	AGTAG	MSKIINLTVGLIFGSIFAISLILVLMIFFAVLIPFLFYFTVKEVLKYLTKR
Ga0315907_100893767	F001840	N/A	MKDQDSIFLICECYEHGLLVEKFKDENEVSLSLFERGLKGRILCWSERLRWCWQILRYGRPWSDFVILNTENQKQLKEFLNECKRV
Ga0315907_100893768	F031030	N/A	MFDDITCKYPLPLPEDPKGYSNNKYQTKDFDNAMDLYEIREDGTLWLRCAEYEYTDGNPNAKSLIEKLPTRKETKVWWQQIFPITDTVRLYAYDSDTNDTYDYWIEYDVTFVDGKVTKAKLLEFTATDNSERKERHRKDVEYWKSRRIFESTLFYRLVGKYYNKLISFICRSIHKSATWITYKIWKVEKFLKI