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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031758 Open in IMG/M |
| Scaffold ID | Ga0315907_10068094 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3090 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001964 | Metagenome | 610 | Y |
| F002227 | Metagenome | 580 | Y |
| F074789 | Metagenome | 119 | Y |
| F086618 | Metagenome | 110 | N |
| F090064 | Metagenome | 108 | N |
| F102590 | Metagenome | 101 | N |
| F103133 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315907_100680941 | F001964 | GGAGG | MSQSRNLFAPTRYKVQISGAIGWADLKQRTVSYETVIFATRKEAEAAAKQLNPNEYTQGRLRVVPKDMPEDYDVYPIPERTSEKPTIK |
| Ga0315907_1006809410 | F074789 | N/A | MKTAIKTFRALESDGLVRLRAFPETESWFDVYGEPDSAQERQEIIDQIDRDGCWLVESEFYADGAWHHADSVGMCVGYENPLDPAENCYVEDLMRAAIDALEMQSTEGALI |
| Ga0315907_1006809411 | F086618 | N/A | MASIQRIETAVSNLINGNLTQARKSARGLTYSDIFDWLSGSVGWPENRSRACADYLIGRIDFRTYCSSTNR |
| Ga0315907_100680943 | F002227 | AGG | MKLTIQSKTNAQTIIDLFNAVINGEVQEHGAQPLSIYDDDKHICSIVAANGEQILELIIEREDGDRIMPRASETETL |
| Ga0315907_100680946 | F090064 | GAG | MSMKIYWTVYFGKFRRSEYTFQGTNAKRDAQRLAKRLGGRVVREKGQQ |
| Ga0315907_100680947 | F102590 | N/A | MRTEQFTPGPWRTTGINVRAGDALICWATNHHANAETPEPEKLANARLIAAAPDLLLALERLTHPMADDEDLSFARDCIANARGK |
| Ga0315907_100680948 | F103133 | AGGA | MRYKIQMQSANGWSDLRESTDGETYETCLFPTRNAALAAREEFSELSEFLETTRIVTAETPETENIYA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |