Scaffold Ga0315907_10060990

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10060990
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3288
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010917	Metagenome	297	Y
F019996	Metagenome / Metatranscriptome	226	Y
F050330	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1006099010	F050330	AGGA	MANETTSTSIATLYTKKVKTKGTYRVYKPKPLKMPKRKK
Ga0315907_100609906	F019996	AGAAG	MSKCIFCKRLMINKLEQHIKACHKCIIDLLSKRHNLKVKKQAPISISTKKYEKI
Ga0315907_100609908	F010917	N/A	MILDKITFGSRIINLNLIDKEQASKKKIFGEFDSDTNTLTLDKSLDNIQMANTILHEICHMIHDEYKLDLSAKAEELVCNSIGNGLCHVLYQNQDLLEFLYKSLKKA