Scaffold Ga0315907_10058108

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10058108
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3380
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F003965	Metagenome / Metatranscriptome	459	Y
F081245	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1005810812	F081245	GGA	MIDYVKQLELKNYLSDEEIDPLAKRLDELISKGEYK
Ga0315907_1005810813	F003965	AGGA	MNSTIIQVCKSHVPNKSAISDVNDEQFTFCEICENNIERWYNDTDPERLPMWSNWTVSK
Ga0315907_100581082	F000808	AGGAG	MLDREYNYSLTTSYDGELVHTLRVSDMLEAVDAWNKCVDFGDAKEYATYNLSDPTGKMYTKNFYRNGVVNGK
Ga0315907_100581088	F000447	GAG	MGYIEIFRMNNEGAGWVDLSEATPDELFNLELGLLNENALFNTPEAD