Scaffold Ga0315907_10052383

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10052383
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3587
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013526	Metagenome / Metatranscriptome	270	Y
F014496	Metagenome / Metatranscriptome	262	Y
F017484	Metagenome / Metatranscriptome	240	Y
F083931	Metagenome / Metatranscriptome	112	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1005238310	F017484	AGGTGG	MATLEIFEMNSNGAGWVSLENASADTKLDLELAILTKAEVKMLCFKCHVEIPRGNVCVNHKDVKGAVYFD
Ga0315907_1005238312	F085710	AGG	MDYFDYYDEVYTDIYLEFGADSVSDPAHAEALLGKSQS
Ga0315907_100523835	F083931	AGG	MTTSTYIDYPFTANGVNFISRVYSHSDMAKVIANLPEGIFAKLNQDAVSELIGDPSLLSTPELLQELTHINAGGSGAFIMLGDN
Ga0315907_100523837	F014496	AGG	MKTYSIEDLLVGQTYFPRSLARRFQGGEITFAEKREDIWLDGYEAYAIRFRVGQSIKQNWATVAVKVAD
Ga0315907_100523839	F013526	AGGAG	LTKKNILISFVTEADTDLDAIFALNKVMYKLPESDVVKFDAFEVLDVVE