Scaffold Ga0315907_10031603

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10031603
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4772
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022399	Metagenome	214	Y
F053253	Metagenome	141	Y
F063633	Metagenome	129	Y
F084156	Metagenome / Metatranscriptome	112	N
F093851	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100316031	F053253	GGAG	MIDFDLEIPLEKILTDMLDKVEGHIVNCQCVDCNSLEVLAYMIKVEE
Ga0315907_1003160311	F063633	AGG	MANTYKDKKVQHIQGLRRSGASGIHKNKVKDRQKRLSNAKIWKDYIKDENE
Ga0315907_100316032	F084156	AGGA	MTDLCWYDTKQGDNCQWECSDIPGQFYCKNCDGLRIWNRFAQAYSHYVREKV
Ga0315907_100316033	F093851	AGGAG	MQDYKYLDTDLDDMIYALDSVLTTINSDDDPWLYNNTWRAMELLKGLKVKGFGND
Ga0315907_100316034	F022399	AGGTGG	MDKKYKEIYSKNGLQVFVNPEDYWADYKVRLNGYHAKTFYGETAWMDVTRWVHDQAMEFYDFDVDGIHRQWKTDLIEEIERRFSDAGL