NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10031603

Scaffold Ga0315907_10031603


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10031603 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4772
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022399Metagenome214Y
F053253Metagenome141Y
F063633Metagenome129Y
F084156Metagenome / Metatranscriptome112N
F093851Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100316031F053253GGAGMIDFDLEIPLEKILTDMLDKVEGHIVNCQCVDCNSLEVLAYMIKVEE
Ga0315907_1003160311F063633AGGMANTYKDKKVQHIQGLRRSGASGIHKNKVKDRQKRLSNAKIWKDYIKDENE
Ga0315907_100316032F084156AGGAMTDLCWYDTKQGDNCQWECSDIPGQFYCKNCDGLRIWNRFAQAYSHYVREKV
Ga0315907_100316033F093851AGGAGMQDYKYLDTDLDDMIYALDSVLTTINSDDDPWLYNNTWRAMELLKGLKVKGFGND
Ga0315907_100316034F022399AGGTGGMDKKYKEIYSKNGLQVFVNPEDYWADYKVRLNGYHAKTFYGETAWMDVTRWVHDQAMEFYDFDVDGIHRQWKTDLIEEIERRFSDAGL

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