Scaffold Ga0315907_10030001

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10030001
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4920
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033362	Metagenome	177	Y
F037637	Metagenome	167	Y
F104496	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1003000111	F104496	N/A	MKKRTGILINSIIILLGYNYENYLLLGIGAICLTLVLISKTKRHELKN
Ga0315907_1003000114	F033362	N/A	MIPITQFIDVIKKHGALGVLALWLTYTHFEVQDVKDRLYNCLEKNEVYNRQPIEEKQPPLPSEKNDTVAVLESKKRILAKK
Ga0315907_100300019	F037637	N/A	MNWGNKQKRTKRVTLSFEWSDKSDLRVILDDLRALIVSGVESYHDQKKSIEIADKWHEVEFKQEYVDKIHESTESDINGELKLVIKSNF