NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10013119

Scaffold Ga0315907_10013119


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10013119 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8043
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005348Metagenome / Metatranscriptome403Y
F009882Metagenome / Metatranscriptome311Y
F012455Metagenome / Metatranscriptome280Y
F018352Metagenome / Metatranscriptome235Y
F029439Metagenome / Metatranscriptome188Y
F034574Metagenome / Metatranscriptome174Y
F081245Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100131191F034574GAGGMKITYSIWQGSLQKGTLTANSIKDIIKIIDEFNSVNPPLKFEYLVHKIEQVA
Ga0315907_1001311911F005348AGGMINSVMAFDCDECNGAGLIFWGNDLDYDVEKCQCEDFALGTLFTSGEAN
Ga0315907_1001311913F018352AGGAMGKFKDTLTEILAHDECYGAGWQFVGNAIDYDVWACECNPYNIPADEIQEYHQLFNTKEN
Ga0315907_1001311921F009882AGCAGGMSTNINDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEATYLTSKVTDLEWDLHSARAKEDSLRSLQGTVRQLEDSIVEWYDPNYSKEEVLVALCELFGINPVKEIEVQGTVSFSGTISVPMSEIADFDLSNVSIEAELSSYDYDADLNVDEVSLEDHY
Ga0315907_100131193F029439AGGMTTLNTITLEPNHVMASSNTGSPMVFRNTVGNYISRKAYLEMLATKQGVVSHRYLSPNESRWVISNMKESI
Ga0315907_100131195F081245GGTGGMRNYVKQLELENYLSDEEIDPLAKRLDELILKGEYK
Ga0315907_100131197F012455GGAGMIKEIKNKIIRIQELRRSNAAIVIPSKKNYSRKIKHKNKLQ
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