NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10010498

Scaffold Ga0315907_10010498


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10010498 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9211
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (54.17%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040005Metagenome / Metatranscriptome162N
F055663Metagenome138Y
F068613Metagenome / Metatranscriptome124Y
F088538Metagenome / Metatranscriptome109N
F096928Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001049810F055663GAGMTDFLNLKISQKQIICLKHGTHKHYISSDIEGHEGHWCMLCWLETLGPSLPLVEEQLDD
Ga0315907_1001049811F088538GAGGMTNYKATADQWAYQEHWAQEDGDAACLLELRDRVQSLEDDSWKQAESTSYCVDALVKRIEALEANTKQWRTDHLRLANICAGMTEDRFEFFGKLLPEEESTPEGEILDYYSKLAAQHAGGAVFHKDPSLTERVVMAITRDGEKARWGEARAAMLEIARWLELRAGGTRACWLLEREAQK
Ga0315907_1001049816F096928N/AMTDFEKVSMEEVRVRVQRKSKTTPLREEILSMKPGDAISVSFYNSETGEGYKPTTVAQVVSQMTKHSPELRYSMRKDASGLSCFVMCIEKTPEDALRPRRGRKPKNLEVAS
Ga0315907_1001049818F040005N/AMEFTFNSKSLEREVSLHQIYELTPSEARNLHAELVIAVQSMDERVSEALTTEHASGIPADKDWIHRVKKKRRICVAFATQVKQMLDAPQQQAAPVSNFTTIFQRRFEELLLEELGQTVFDEIKAEARDLALADLQVPTQGA
Ga0315907_100104985F068613GGCGGLIVTTRRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQPVVEVRK
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