NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10007531

Scaffold Ga0315907_10007531


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10007531 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11339
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (65.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F008245Metagenome / Metatranscriptome336N
F068743Metagenome / Metatranscriptome124Y
F080044Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000753110F000369N/AMDIELADHFDRMNKVVEELLKGNNPTQIATLTGFKRAEVLEYIDEWKQVVRNDSTARDRAKEAVSGADQHYAMLIKEAWKTVEDADQAGQLNVKATSLKLIADIEGKRIGMLQEVGLLDNAELATQIAETEHKQEILVKILKEVTASCPKCKMEVAKRLSQITGVVEPVMVHDESTEVL
Ga0315907_1000753119F008245GGAMDRLWNGAKGTIMNQDKNTLELISDITEFNDLHEFMNDEHLDKALAIVVKMLMNPDVPSAKAPHLIIELQAMSTKFAVMASVYSTIAKDKAGTANNNKKNVYYSLKESIDKLVDALKYVVRYNS
Ga0315907_1000753122F080044N/AMPNLDEFLNPKIEEKEYNIEVLQGIRACKTCDEDVSGAYWDPVDLVMSWRCSKGHETIFKVQ
Ga0315907_100075315F068743AGGAGMPWKIEEGTAGCRGFAVVKEGGELVGCHPSRSRAEAHMRALYASEADAKKMEDKKKKIF
Ga0315907_100075318F000376GGAMSIYQEKAKECKCCGKHVPLPTVLKEYNGLMLCPTTFANMIEYRRLWKSLGARPPGNIRKHFSDYVQQLVETTIDKNEDGTL
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